Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003571A_C01 KMC003571A_c01
(464 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00043789.1| hypothetical protein [Magnetococcus sp. MC-1] 33 1.9
sp|P47849|RF1_COXBU Peptide chain release factor 1 (RF-1) gi|742... 32 2.5
gb|AAA65915.1| beta-N-hexosaminidase [Vibrio parahaemolyticus] 32 3.3
ref|NP_791709.1| L-serine dehydratase 1 [Pseudomonas syringae pv... 32 3.3
ref|NP_534158.1| hypothetical protein [Agrobacterium tumefaciens... 31 5.6
>gb|ZP_00043789.1| hypothetical protein [Magnetococcus sp. MC-1]
Length = 361
Score = 32.7 bits (73), Expect = 1.9
Identities = 25/66 (37%), Positives = 35/66 (52%), Gaps = 3/66 (4%)
Frame = -3
Query: 450 EHVELQIQ-KEKTMDNDQGSGMGCGQSRDNRTR--RTTQGNRGTFIMCLDEHDQWKNKAR 280
+ VEL I+ K+ +D + SG G GQS + R T G ++C DE Q KNKA+
Sbjct: 212 DEVELHIEDKDLRIDVYRSSGPG-GQSVNTTDSAVRITHLPTGLVVICQDEKSQHKNKAK 270
Query: 279 DKGILQ 262
+LQ
Sbjct: 271 AMKVLQ 276
>sp|P47849|RF1_COXBU Peptide chain release factor 1 (RF-1) gi|7428980|pir||A61648
translation releasing factor RF-1 - Coxiella burnetii
gi|623028|emb|CAA55563.1| orf 361~ranslated orf
similarity to SW: RF1_SALTY peptide chain release factor
1 of Salmonella typhimurium [Coxiella burnetii]
Length = 361
Score = 32.3 bits (72), Expect = 2.5
Identities = 22/56 (39%), Positives = 28/56 (49%), Gaps = 2/56 (3%)
Frame = -3
Query: 423 EKTMDNDQGSGMGCGQ--SRDNRTRRTTQGNRGTFIMCLDEHDQWKNKARDKGILQ 262
E +D + SG G GQ +R + R T G + C DE Q KNKAR +LQ
Sbjct: 223 ELRIDTFRASGAG-GQHVNRTDSAIRITHLPTGVVVECQDERSQHKNKARAMSLLQ 277
>gb|AAA65915.1| beta-N-hexosaminidase [Vibrio parahaemolyticus]
Length = 741
Score = 32.0 bits (71), Expect = 3.3
Identities = 35/146 (23%), Positives = 59/146 (39%), Gaps = 14/146 (9%)
Frame = -1
Query: 413 WTMTRDQGWAVA--SQGTTVQEGQHRAIE-------AHLLCALMNMTSGRIRLEIKGFCK 261
W +T D+GW + S G R ++ +HL L R C
Sbjct: 296 WHLTDDEGWRIEIKSLPQLTDIGAWRGLDETNEPQYSHLAERLRRFLHSRRHQRRGCLCF 355
Query: 260 EWLIY-KQELQTPYHCNRLILSGVNVVIQMENFFMYRCLK*VNDNTHHLTL----E*CD* 96
E + E+ P HC I S +++++ E+ YR ++ NDN + L E D
Sbjct: 356 ETRHHCYPEIDVPGHCRAAIKSLPHLLVEAEDTTEYRSIQHYNDNVINPALPGSYEFIDK 415
Query: 95 IMKKTIRIALIFIMYSSSLLT*NVIS 18
++++ R +L + S + T V S
Sbjct: 416 VLEEVSRCSLPLMFISVRISTNGVWS 441
>ref|NP_791709.1| L-serine dehydratase 1 [Pseudomonas syringae pv. tomato str.
DC3000] gi|28852330|gb|AAO55404.1| L-serine dehydratase
1 [Pseudomonas syringae pv. tomato str. DC3000]
Length = 458
Score = 32.0 bits (71), Expect = 3.3
Identities = 17/54 (31%), Positives = 27/54 (49%), Gaps = 2/54 (3%)
Frame = +3
Query: 165 EILHLDDHINS*QYQAITMVWRLEFLLINQ--PFFAKSLYL*PYSSTGHVHQGT 320
+ L D+ + QAIT VW + L+++ P+ + L Y TG VH+ T
Sbjct: 89 DALRADNQLMLAGEQAITFVWERDMCLLDESLPYHPNGMTLCAYGKTGEVHEQT 142
>ref|NP_534158.1| hypothetical protein [Agrobacterium tumefaciens str. C58 (U.
Washington)] gi|25380007|pir||AD3007 hypothetical
protein Atu3662 [imported] - Agrobacterium tumefaciens
(strain C58, Dupont) gi|17742078|gb|AAL44474.1|
hypothetical protein [Agrobacterium tumefaciens str. C58
(U. Washington)]
Length = 477
Score = 31.2 bits (69), Expect = 5.6
Identities = 18/54 (33%), Positives = 27/54 (49%), Gaps = 1/54 (1%)
Frame = -3
Query: 411 DNDQGSGMGCG-QSRDNRTRRTTQGNRGTFIMCLDEHDQWKNKARDKGILQRMA 253
+N S +G Q+ R +T Q +R T + + D W K RDK + QR+A
Sbjct: 228 ENKYESHLGTSAQTYRERDEKTLQAHRATLNLIQSDFDAWNRKRRDKAV-QRLA 280
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 409,906,707
Number of Sequences: 1393205
Number of extensions: 8838787
Number of successful extensions: 21079
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21066
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
