Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003570A_C01 KMC003570A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S49225 guanine nucleotide regulatory protein - fava bean gi... 118 5e-26
emb|CAA98166.1| RAB5A [Lotus japonicus] 118 7e-26
emb|CAC24474.1| GTP binding protein [Cichorium intybus x Cichori... 117 1e-25
emb|CAC24475.1| GTP binding protein [Cichorium intybus x Cichori... 117 1e-25
emb|CAB57220.1| GTP binding protein [Cichorium intybus x Cichori... 117 1e-25
>pir||S49225 guanine nucleotide regulatory protein - fava bean
gi|547478|emb|CAA85733.1| guanine nucleotide regulatory
protein [Vicia faba] gi|1098297|prf||2115367E small
GTP-binding protein
Length = 200
Score = 118 bits (296), Expect = 5e-26
Identities = 58/65 (89%), Positives = 62/65 (95%)
Frame = -1
Query: 595 EEARVYAEDNGLFFMETSA*TAAHVNDVFYEIAKRLPRAQPAPDPAGMVLVDRPAEGSRA 416
EEARVYAE+NGLFFMETSA +AA+VNDVFYEIAKRLPRAQPA +PAGMVLVDRP EGSRA
Sbjct: 136 EEARVYAEENGLFFMETSAKSAANVNDVFYEIAKRLPRAQPAQNPAGMVLVDRPTEGSRA 195
Query: 415 ASCCS 401
ASCCS
Sbjct: 196 ASCCS 200
>emb|CAA98166.1| RAB5A [Lotus japonicus]
Length = 200
Score = 118 bits (295), Expect = 7e-26
Identities = 57/65 (87%), Positives = 63/65 (96%)
Frame = -1
Query: 595 EEARVYAEDNGLFFMETSA*TAAHVNDVFYEIAKRLPRAQPAPDPAGMVLVDRPAEGSRA 416
+EARVYAE+NGLFFMETSA TAA+VNDVFYEIAKRLPRAQPA +PAGMVLVDRPAEG+RA
Sbjct: 136 DEARVYAEENGLFFMETSAKTAANVNDVFYEIAKRLPRAQPAQNPAGMVLVDRPAEGARA 195
Query: 415 ASCCS 401
+SCCS
Sbjct: 196 SSCCS 200
>emb|CAC24474.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 196
Score = 117 bits (292), Expect = 1e-25
Identities = 57/65 (87%), Positives = 62/65 (94%)
Frame = -1
Query: 595 EEARVYAEDNGLFFMETSA*TAAHVNDVFYEIAKRLPRAQPAPDPAGMVLVDRPAEGSRA 416
EEARVYAE+NGLFFMETSA TAA+VNDVF+EIAKRLPRAQP +PAGMVLVDRPAEG+RA
Sbjct: 132 EEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLPRAQPTQNPAGMVLVDRPAEGARA 191
Query: 415 ASCCS 401
ASCCS
Sbjct: 192 ASCCS 196
>emb|CAC24475.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 196
Score = 117 bits (292), Expect = 1e-25
Identities = 57/65 (87%), Positives = 62/65 (94%)
Frame = -1
Query: 595 EEARVYAEDNGLFFMETSA*TAAHVNDVFYEIAKRLPRAQPAPDPAGMVLVDRPAEGSRA 416
EEARVYAE+NGLFFMETSA TAA+VNDVF+EIAKRLPRAQP +PAGMVLVDRPAEG+RA
Sbjct: 132 EEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLPRAQPTQNPAGMVLVDRPAEGARA 191
Query: 415 ASCCS 401
ASCCS
Sbjct: 192 ASCCS 196
>emb|CAB57220.1| GTP binding protein [Cichorium intybus x Cichorium endivia]
Length = 200
Score = 117 bits (292), Expect = 1e-25
Identities = 57/65 (87%), Positives = 62/65 (94%)
Frame = -1
Query: 595 EEARVYAEDNGLFFMETSA*TAAHVNDVFYEIAKRLPRAQPAPDPAGMVLVDRPAEGSRA 416
EEARVYAE+NGLFFMETSA TAA+VNDVF+EIAKRLPRAQP +PAGMVLVDRPAEG+RA
Sbjct: 136 EEARVYAEENGLFFMETSAKTAANVNDVFHEIAKRLPRAQPTQNPAGMVLVDRPAEGARA 195
Query: 415 ASCCS 401
ASCCS
Sbjct: 196 ASCCS 200
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,671,246
Number of Sequences: 1393205
Number of extensions: 11047198
Number of successful extensions: 26220
Number of sequences better than 10.0: 336
Number of HSP's better than 10.0 without gapping: 25641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26213
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
