Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003569A_C01 KMC003569A_c01
(782 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK76707.2| unknown protein [Arabidopsis thaliana] 117 1e-25
ref|NP_680408.1| Expressed protein; protein id: At5g48655.1, sup... 117 1e-25
gb|AAM61659.1| unknown [Arabidopsis thaliana] 117 1e-25
ref|NP_568701.1| Expressed protein; protein id: At5g48655.2, sup... 117 1e-25
ref|NP_187376.1| putative RING zinc finger protein; protein id: ... 105 6e-22
>gb|AAK76707.2| unknown protein [Arabidopsis thaliana]
Length = 192
Score = 117 bits (294), Expect = 1e-25
Identities = 52/68 (76%), Positives = 56/68 (81%)
Frame = -2
Query: 673 KKPPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKACIKAAISAQNKCPTCRKKVTVKEL 494
K P PP+EP F+CPICM P EEMST+CGHIFCK CIK AIS Q KCPTCRKKVT KEL
Sbjct: 124 KAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKCPTCRKKVTAKEL 183
Query: 493 IRVFLPST 470
IRVFLP+T
Sbjct: 184 IRVFLPTT 191
>ref|NP_680408.1| Expressed protein; protein id: At5g48655.1, supported by cDNA:
gi_15028166 [Arabidopsis thaliana]
Length = 153
Score = 117 bits (294), Expect = 1e-25
Identities = 52/68 (76%), Positives = 56/68 (81%)
Frame = -2
Query: 673 KKPPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKACIKAAISAQNKCPTCRKKVTVKEL 494
K P PP+EP F+CPICM P EEMST+CGHIFCK CIK AIS Q KCPTCRKKVT KEL
Sbjct: 85 KAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKCPTCRKKVTAKEL 144
Query: 493 IRVFLPST 470
IRVFLP+T
Sbjct: 145 IRVFLPTT 152
>gb|AAM61659.1| unknown [Arabidopsis thaliana]
Length = 203
Score = 117 bits (294), Expect = 1e-25
Identities = 52/68 (76%), Positives = 56/68 (81%)
Frame = -2
Query: 673 KKPPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKACIKAAISAQNKCPTCRKKVTVKEL 494
K P PP+EP F+CPICM P EEMST+CGHIFCK CIK AIS Q KCPTCRKKVT KEL
Sbjct: 135 KAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKCPTCRKKVTAKEL 194
Query: 493 IRVFLPST 470
IRVFLP+T
Sbjct: 195 IRVFLPTT 202
>ref|NP_568701.1| Expressed protein; protein id: At5g48655.2, supported by cDNA:
12974. [Arabidopsis thaliana] gi|23297683|gb|AAN13007.1|
unknown protein [Arabidopsis thaliana]
gi|26451492|dbj|BAC42844.1| putative RING zinc finger
[Arabidopsis thaliana]
Length = 203
Score = 117 bits (294), Expect = 1e-25
Identities = 52/68 (76%), Positives = 56/68 (81%)
Frame = -2
Query: 673 KKPPEPPKEPVFSCPICMGPLVEEMSTRCGHIFCKACIKAAISAQNKCPTCRKKVTVKEL 494
K P PP+EP F+CPICM P EEMST+CGHIFCK CIK AIS Q KCPTCRKKVT KEL
Sbjct: 135 KAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKCPTCRKKVTAKEL 194
Query: 493 IRVFLPST 470
IRVFLP+T
Sbjct: 195 IRVFLPTT 202
>ref|NP_187376.1| putative RING zinc finger protein; protein id: At3g07200.1
[Arabidopsis thaliana]
gi|6642645|gb|AAF20226.1|AC012395_13 putative RING zinc
finger protein [Arabidopsis thaliana]
Length = 182
Score = 105 bits (263), Expect = 6e-22
Identities = 45/63 (71%), Positives = 54/63 (85%)
Frame = -2
Query: 658 PPKEPVFSCPICMGPLVEEMSTRCGHIFCKACIKAAISAQNKCPTCRKKVTVKELIRVFL 479
P +EP FSCPIC+ P +E+ST+CGHIFCK CIK A+S Q KCPTCRKK+TVK+LIRVFL
Sbjct: 119 PVEEPKFSCPICLCPFTQEVSTKCGHIFCKKCIKNALSLQAKCPTCRKKITVKDLIRVFL 178
Query: 478 PST 470
P+T
Sbjct: 179 PTT 181
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 640,372,128
Number of Sequences: 1393205
Number of extensions: 13882285
Number of successful extensions: 39041
Number of sequences better than 10.0: 1582
Number of HSP's better than 10.0 without gapping: 37053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38779
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38935490438
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
