Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003565A_C01 KMC003565A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190965.1| putative protein; protein id: At3g53970.1, supp... 77 2e-13
pir||T05913 hypothetical protein - barley (fragment) gi|3355618|... 75 7e-13
dbj|BAC57725.1| P0534A03.16 [Oryza sativa (japonica cultivar-gro... 72 3e-12
gb|AAL87662.1|AF456416_1 dynamin-like protein [Giardia intestina... 46 3e-04
gb|AAH43317.1| Similar to procollagen, type IV, alpha 5 [Mus mus... 42 0.005
>ref|NP_190965.1| putative protein; protein id: At3g53970.1, supported by cDNA:
gi_17381083 [Arabidopsis thaliana]
gi|18203248|sp|Q9M330|PSF1_ARATH Putative proteasome
inhibitor gi|11357821|pir||T45937 hypothetical protein
F5K20.270 - Arabidopsis thaliana
gi|7630017|emb|CAB88359.1| putative protein [Arabidopsis
thaliana] gi|17381084|gb|AAL36354.1| unknown protein
[Arabidopsis thaliana] gi|21436237|gb|AAM51257.1|
unknown protein [Arabidopsis thaliana]
Length = 302
Score = 76.6 bits (187), Expect = 2e-13
Identities = 36/59 (61%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Frame = -2
Query: 531 PGFPG----GLPGVPPGARFDPYGPPGIPGFEPNRFARNPRRPGNDTHPDLQHFRRDAD 367
PGF G G+P PPGARFDPYGPPG+PGFEP RF R P R HPDL+HF +D
Sbjct: 244 PGFMGPPHPGMP--PPGARFDPYGPPGVPGFEPGRFTRQPPRGPGGGHPDLEHFPGGSD 300
>pir||T05913 hypothetical protein - barley (fragment) gi|3355618|emb|CAA03958.1|
unnamed protein product [Hordeum vulgare subsp. vulgare]
Length = 64
Score = 74.7 bits (182), Expect = 7e-13
Identities = 32/57 (56%), Positives = 38/57 (66%)
Frame = -2
Query: 537 GGPGFPGGLPGVPPGARFDPYGPPGIPGFEPNRFARNPRRPGNDTHPDLQHFRRDAD 367
GGPG VPPG R+DP GPP +PGFEP+RF R R PG THPDL+ F++ D
Sbjct: 13 GGPG------SVPPGGRYDPIGPPDVPGFEPSRFVRRSRHPGGSTHPDLEFFQQGPD 63
>dbj|BAC57725.1| P0534A03.16 [Oryza sativa (japonica cultivar-group)]
Length = 280
Score = 72.4 bits (176), Expect = 3e-12
Identities = 31/53 (58%), Positives = 36/53 (67%)
Frame = -2
Query: 537 GGPGFPGGLPGVPPGARFDPYGPPGIPGFEPNRFARNPRRPGNDTHPDLQHFR 379
GGPG VPPG R+DP GPP +PGFEP+RF R PR P THPDL+ F+
Sbjct: 227 GGPG------SVPPGGRYDPIGPPDVPGFEPSRFVRRPRPPAGTTHPDLEFFQ 273
>gb|AAL87662.1|AF456416_1 dynamin-like protein [Giardia intestinalis]
gi|29245695|gb|EAA37320.1| GLP_300_9766_11964 [Giardia
lamblia ATCC 50803]
Length = 732
Score = 45.8 bits (107), Expect = 3e-04
Identities = 24/48 (50%), Positives = 24/48 (50%)
Frame = -2
Query: 540 PGGPGFPGGLPGVPPGARFDPYGPPGIPGFEPNRFARNPRRPGNDTHP 397
PGGPG PGG PG PG P GPPG PG R P PG P
Sbjct: 557 PGGPGGPGGPPG-GPGMNRGPGGPPGAPGGPGGPMNRGPGGPGGPGGP 603
Score = 40.0 bits (92), Expect = 0.018
Identities = 26/58 (44%), Positives = 27/58 (45%), Gaps = 15/58 (25%)
Frame = +2
Query: 413 PGLRGFLANLLGS--NPGMPGGP*GS---NRAPGGTPGNP----------PGKPGPPG 541
PG+ GF G PG PGGP G NR PGG PG P PG PG PG
Sbjct: 544 PGMGGFPPGGPGGPGGPGGPGGPPGGPGMNRGPGGPPGAPGGPGGPMNRGPGGPGGPG 601
Score = 38.1 bits (87), Expect = 0.069
Identities = 21/33 (63%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +2
Query: 446 GSNPGMPGGP*G-SNRAPGGTPGNP--PGKPGP 535
G PG PGGP G NR PGG PG P PG PGP
Sbjct: 577 GGPPGAPGGPGGPMNRGPGG-PGGPGGPGGPGP 608
Score = 34.3 bits (77), Expect = 0.99
Identities = 24/65 (36%), Positives = 25/65 (37%), Gaps = 28/65 (43%)
Frame = +2
Query: 431 LANLLGSN-----------------------PGMPGGP*GSNRAPGGT-----PGNPPGK 526
+ANL SN PG PGGP G PGG PG PPG
Sbjct: 523 MANLDVSNQGFGESNFGGPGGPGMGGFPPGGPGGPGGPGGPGGPPGGPGMNRGPGGPPGA 582
Query: 527 PGPPG 541
PG PG
Sbjct: 583 PGGPG 587
>gb|AAH43317.1| Similar to procollagen, type IV, alpha 5 [Mus musculus]
Length = 585
Score = 42.0 bits (97), Expect = 0.005
Identities = 21/45 (46%), Positives = 25/45 (54%), Gaps = 2/45 (4%)
Frame = +2
Query: 413 PGLRGFLANLLGSNPGMPGGP*GSNRAPGGTPG--NPPGKPGPPG 541
PG +GF + PG PG P + P G PG PPG+PGPPG
Sbjct: 119 PGFQGFPG--MPGPPGPPGSPGQALEGPKGNPGPQGPPGRPGPPG 161
Score = 37.4 bits (85), Expect = 0.12
Identities = 24/47 (51%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +2
Query: 413 PGLRGFLANLLGSNPGMPGGP--*GSNRAPG--GTPGNPPGKPGPPG 541
PGL G + G +PG+PG P GS PG G PG PG PGPPG
Sbjct: 92 PGLSGQKGD--GGSPGLPGNPGLPGSKGEPGFQGFPG-MPGPPGPPG 135
Score = 35.4 bits (80), Expect = 0.44
Identities = 19/35 (54%), Positives = 20/35 (56%), Gaps = 6/35 (17%)
Frame = -2
Query: 540 PGGPGFPG-----GLPGVP-PGARFDPYGPPGIPG 454
PG PG PG GLPG+P P P GPPG PG
Sbjct: 275 PGPPGIPGQPGLKGLPGLPGPQGLPGPIGPPGDPG 309
Score = 35.4 bits (80), Expect = 0.44
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Frame = -2
Query: 540 PGGPGFPG-------GLPGVPPGARFDPYGPPGIPGFE 448
PG PGFPG GLPG P GPPG PGF+
Sbjct: 7 PGPPGFPGPKGEPGFGLPGPP--------GPPGFPGFK 36
Score = 34.3 bits (77), Expect = 0.99
Identities = 22/62 (35%), Positives = 25/62 (39%), Gaps = 9/62 (14%)
Frame = -2
Query: 540 PGGPGFPG--GLPGVPPGARFDPYGPPGIPGFEPNR-------FARNPRRPGNDTHPDLQ 388
PG G PG G G P F GPPG+PG + NP PG+ P Q
Sbjct: 63 PGQDGIPGPAGQKGEPGQPGFGIPGPPGLPGLSGQKGDGGSPGLPGNPGLPGSKGEPGFQ 122
Query: 387 HF 382
F
Sbjct: 123 GF 124
Score = 33.5 bits (75), Expect = 1.7
Identities = 23/49 (46%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +2
Query: 410 FPGLRGFLANLLGSNPGMPGGP*GSNRAPG-----GTPGNPPGKPGPPG 541
FPG +G L PG PG P G PG G PG P G PGPPG
Sbjct: 12 FPGPKGEPGFGLPGPPGPPGFP-GFKGTPGPKGDRGFPG-PSGPPGPPG 58
Score = 32.7 bits (73), Expect = 2.9
Identities = 21/42 (50%), Positives = 24/42 (57%)
Frame = -2
Query: 537 GGPGFPGGLPGVPPGARFDPYGPPGIPGFEPNRFARNPRRPG 412
G PG P G PG+P G + D GPPG+PG NP RPG
Sbjct: 185 GNPG-PPGQPGLP-GLKGDQ-GPPGLPG--------NPGRPG 215
Score = 32.3 bits (72), Expect = 3.8
Identities = 23/53 (43%), Positives = 25/53 (46%), Gaps = 10/53 (18%)
Frame = +2
Query: 413 PGLRGFLANL-LGSNPGMPG--GP*G--SNRAPGGTPG-----NPPGKPGPPG 541
PGL G + L PG PG GP G + P G PG PPG PGP G
Sbjct: 214 PGLNGMKGDPGLPGVPGFPGMKGPIGVPGSTGPDGEPGLTGPPGPPGLPGPSG 266
Score = 32.0 bits (71), Expect = 4.9
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 9/38 (23%)
Frame = -2
Query: 540 PGGPGFPG--GLPGVPPGARFD-------PYGPPGIPG 454
PG PGFPG G GVP D P GPPG+PG
Sbjct: 226 PGVPGFPGMKGPIGVPGSTGPDGEPGLTGPPGPPGLPG 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,118,313
Number of Sequences: 1393205
Number of extensions: 12027959
Number of successful extensions: 84027
Number of sequences better than 10.0: 1115
Number of HSP's better than 10.0 without gapping: 45003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74541
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
