Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003563A_C01 KMC003563A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181104.2| unknown protein; protein id: At2g35610.1, suppo... 166 2e-40
pir||G84770 hypothetical protein At2g35610 [imported] - Arabidop... 166 2e-40
gb|AAD15452.2| unknown protein [Arabidopsis thaliana] 159 3e-38
gb|AAC47167.1| P-type ATPase 33 3.7
ref|NP_198992.1| cell cycle control crn (crooked neck) protein-l... 33 3.7
>ref|NP_181104.2| unknown protein; protein id: At2g35610.1, supported by cDNA:
gi_18377746 [Arabidopsis thaliana]
gi|18377747|gb|AAL67023.1| unknown protein [Arabidopsis
thaliana]
Length = 644
Score = 166 bits (420), Expect = 2e-40
Identities = 71/102 (69%), Positives = 84/102 (81%)
Frame = -1
Query: 603 NNSTVGKVLKFPKHSNEETFIKVFSSFKDVKVIQFSSMQDAFTGFMDKESEDRFRKRVKH 424
NN++ +VLKFPK SNE+TF +FSSF DVKVI+FSS++DAF GF DKE E+RFR+RVK
Sbjct: 542 NNTSPSRVLKFPKRSNEDTFKAIFSSFDDVKVIKFSSIEDAFIGFSDKEREERFRRRVKR 601
Query: 423 YTGIWCCVLDHNPGHIYYDMYWDEKPEWKPIPPQTSADDHPP 298
Y GIWCC + PGHIYYDMYWDEKP WKP+PPQT +DHPP
Sbjct: 602 YVGIWCCEENKTPGHIYYDMYWDEKPGWKPVPPQTPEEDHPP 643
>pir||G84770 hypothetical protein At2g35610 [imported] - Arabidopsis thaliana
Length = 513
Score = 166 bits (420), Expect = 2e-40
Identities = 71/102 (69%), Positives = 84/102 (81%)
Frame = -1
Query: 603 NNSTVGKVLKFPKHSNEETFIKVFSSFKDVKVIQFSSMQDAFTGFMDKESEDRFRKRVKH 424
NN++ +VLKFPK SNE+TF +FSSF DVKVI+FSS++DAF GF DKE E+RFR+RVK
Sbjct: 411 NNTSPSRVLKFPKRSNEDTFKAIFSSFDDVKVIKFSSIEDAFIGFSDKEREERFRRRVKR 470
Query: 423 YTGIWCCVLDHNPGHIYYDMYWDEKPEWKPIPPQTSADDHPP 298
Y GIWCC + PGHIYYDMYWDEKP WKP+PPQT +DHPP
Sbjct: 471 YVGIWCCEENKTPGHIYYDMYWDEKPGWKPVPPQTPEEDHPP 512
>gb|AAD15452.2| unknown protein [Arabidopsis thaliana]
Length = 528
Score = 159 bits (401), Expect = 3e-38
Identities = 70/102 (68%), Positives = 82/102 (79%)
Frame = -1
Query: 603 NNSTVGKVLKFPKHSNEETFIKVFSSFKDVKVIQFSSMQDAFTGFMDKESEDRFRKRVKH 424
NN++ +VLKFPK SNE+TF +FSSF DVKVI+FSS++DAF GF DK E RFR+RVK
Sbjct: 427 NNTSPSRVLKFPKRSNEDTFKAIFSSFDDVKVIKFSSIEDAFIGFSDKAKE-RFRRRVKR 485
Query: 423 YTGIWCCVLDHNPGHIYYDMYWDEKPEWKPIPPQTSADDHPP 298
Y GIWCC + PGHIYYDMYWDEKP WKP+PPQT +DHPP
Sbjct: 486 YVGIWCCEENKTPGHIYYDMYWDEKPGWKPVPPQTPEEDHPP 527
>gb|AAC47167.1| P-type ATPase
Length = 1228
Score = 32.7 bits (73), Expect = 3.7
Identities = 14/37 (37%), Positives = 23/37 (61%)
Frame = -2
Query: 416 VYGAVCWITILATYIMICTGMRNLNGSPSLLKLLQMI 306
++ A+C + LA + ICTG NLNG +L K + ++
Sbjct: 1008 IFEALCVLLSLAFSLYICTGFYNLNGIHNLCKTVNLV 1044
>ref|NP_198992.1| cell cycle control crn (crooked neck) protein-like; protein id:
At5g41770.1 [Arabidopsis thaliana]
gi|10177361|dbj|BAB10652.1| cell cycle control crn
(crooked neck) protein-like [Arabidopsis thaliana]
Length = 665
Score = 32.7 bits (73), Expect = 3.7
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -2
Query: 335 PSLLKLLQMIIHLGEVNFKITFVKTL--RWTIYTPDIQRWLLIVKTQIVYSQVNNLLVIR 162
P + +L IH+ E+ I + + RW ++PD Q WL +K ++ Y+++ I
Sbjct: 143 PRVDQLWYKYIHMEEILGNIAGARQIFERWMDWSPDQQGWLSFIKFELRYNEIERARTIY 202
Query: 161 DETML 147
+ +L
Sbjct: 203 ERFVL 207
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,337,812
Number of Sequences: 1393205
Number of extensions: 11065170
Number of successful extensions: 28965
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 28247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28960
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
