Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003562A_C01 KMC003562A_c01
(399 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG50831.1|AC074395_5 unknown protein, 5' partial [Arabidopsi... 179 6e-45
ref|NP_566328.1| expressed protein; protein id: At3g08030.1, sup... 179 6e-45
ref|NP_181712.1| unknown protein; protein id: At2g41810.1 [Arabi... 157 2e-38
ref|NP_181711.1| unknown protein; protein id: At2g41800.1, suppo... 147 4e-35
pir||T10174 hypothetical protein - castor bean gi|1621268|emb|CA... 126 6e-29
>gb|AAG50831.1|AC074395_5 unknown protein, 5' partial [Arabidopsis thaliana]
Length = 323
Score = 179 bits (455), Expect = 6e-45
Identities = 91/132 (68%), Positives = 101/132 (75%), Gaps = 1/132 (0%)
Frame = +2
Query: 5 KKTRLDGKYALPKWEIKGLVEYITGGPQPGGMYFPVSHGTYAVRLGNEASISQTIKVKPG 184
KKT L GK ALP+WE G VEYI GGPQPGGMYFPV+HG +AVRLGNEA+ISQ ++VKPG
Sbjct: 2 KKTVLLGKNALPEWETTGFVEYIAGGPQPGGMYFPVAHGVHAVRLGNEATISQKLEVKPG 61
Query: 185 QWYALIIGASRTCAQDEVLRISVPWQTGDIPLQTLY-SLNG*CYCLGIQGALLRVIKVTF 361
YAL GASRTCAQDEVLR+SVP Q+GD+PLQTLY S G Y A + VTF
Sbjct: 62 SLYALTFGASRTCAQDEVLRVSVPSQSGDLPLQTLYNSFGGDVYAWAFV-AKTSQVTVTF 120
Query: 362 HNPGVQEDPTCG 397
HNPGVQEDP CG
Sbjct: 121 HNPGVQEDPACG 132
>ref|NP_566328.1| expressed protein; protein id: At3g08030.1, supported by cDNA:
27471., supported by cDNA: gi_18252184 [Arabidopsis
thaliana] gi|6648215|gb|AAF21213.1|AC013483_37 unknown
protein [Arabidopsis thaliana]
gi|18252185|gb|AAL61925.1| unknown protein [Arabidopsis
thaliana] gi|21555252|gb|AAM63815.1| unknown
[Arabidopsis thaliana] gi|23397197|gb|AAN31881.1|
unknown protein [Arabidopsis thaliana]
gi|27311877|gb|AAO00904.1| unknown protein [Arabidopsis
thaliana]
Length = 365
Score = 179 bits (455), Expect = 6e-45
Identities = 91/132 (68%), Positives = 101/132 (75%), Gaps = 1/132 (0%)
Frame = +2
Query: 5 KKTRLDGKYALPKWEIKGLVEYITGGPQPGGMYFPVSHGTYAVRLGNEASISQTIKVKPG 184
KKT L GK ALP+WE G VEYI GGPQPGGMYFPV+HG +AVRLGNEA+ISQ ++VKPG
Sbjct: 44 KKTVLLGKNALPEWETTGFVEYIAGGPQPGGMYFPVAHGVHAVRLGNEATISQKLEVKPG 103
Query: 185 QWYALIIGASRTCAQDEVLRISVPWQTGDIPLQTLY-SLNG*CYCLGIQGALLRVIKVTF 361
YAL GASRTCAQDEVLR+SVP Q+GD+PLQTLY S G Y A + VTF
Sbjct: 104 SLYALTFGASRTCAQDEVLRVSVPSQSGDLPLQTLYNSFGGDVYAWAFV-AKTSQVTVTF 162
Query: 362 HNPGVQEDPTCG 397
HNPGVQEDP CG
Sbjct: 163 HNPGVQEDPACG 174
>ref|NP_181712.1| unknown protein; protein id: At2g41810.1 [Arabidopsis thaliana]
gi|25349286|pir||D84846 hypothetical protein At2g41810
[imported] - Arabidopsis thaliana
gi|2335098|gb|AAC02767.1| unknown protein [Arabidopsis
thaliana] gi|26450362|dbj|BAC42297.1| unknown protein
[Arabidopsis thaliana]
Length = 370
Score = 157 bits (398), Expect = 2e-38
Identities = 77/131 (58%), Positives = 95/131 (71%)
Frame = +2
Query: 5 KKTRLDGKYALPKWEIKGLVEYITGGPQPGGMYFPVSHGTYAVRLGNEASISQTIKVKPG 184
+K ++ GKY+LP WEI G VE ++GGPQPGG YF V G +A RLGN ASISQ +KVK G
Sbjct: 49 RKRQIIGKYSLPHWEISGHVELVSGGPQPGGFYFAVPRGVHAARLGNLASISQYVKVKSG 108
Query: 185 QWYALIIGASRTCAQDEVLRISVPWQTGDIPLQTLYSLNG*CYCLGIQGALLRVIKVTFH 364
Y+L G +RTCAQDE +RISVP QT ++P+QTL+S NG A ++KVTF+
Sbjct: 109 LVYSLTFGVTRTCAQDENIRISVPGQTNELPIQTLFSTNGGDTYAWAFKATSDLVKVTFY 168
Query: 365 NPGVQEDPTCG 397
NPGVQEDPTCG
Sbjct: 169 NPGVQEDPTCG 179
>ref|NP_181711.1| unknown protein; protein id: At2g41800.1, supported by cDNA:
gi_17979519, supported by cDNA: gi_20453310 [Arabidopsis
thaliana] gi|25349285|pir||C84846 hypothetical protein
At2g41800 [imported] - Arabidopsis thaliana
gi|2335099|gb|AAC02768.1| unknown protein [Arabidopsis
thaliana] gi|17979520|gb|AAL50095.1| At2g41800/T11A7.10
[Arabidopsis thaliana] gi|20453311|gb|AAM19894.1|
At2g41800/T11A7.10 [Arabidopsis thaliana]
Length = 370
Score = 147 bits (370), Expect = 4e-35
Identities = 72/131 (54%), Positives = 92/131 (69%)
Frame = +2
Query: 5 KKTRLDGKYALPKWEIKGLVEYITGGPQPGGMYFPVSHGTYAVRLGNEASISQTIKVKPG 184
K ++ G +LP WEI G VE ++GGPQPGG YFPV G +AVRLGN +ISQ ++VK G
Sbjct: 49 KGRQIIGANSLPHWEIAGHVELVSGGPQPGGFYFPVPRGVHAVRLGNLGTISQNVRVKSG 108
Query: 185 QWYALIIGASRTCAQDEVLRISVPWQTGDIPLQTLYSLNG*CYCLGIQGALLRVIKVTFH 364
Y+L GA+RTCAQDE +++SVP Q ++PLQT++S +G A V+KVTFH
Sbjct: 109 LVYSLTFGATRTCAQDENIKVSVPGQANELPLQTVFSSDGGDTYAWAFKATSDVVKVTFH 168
Query: 365 NPGVQEDPTCG 397
NPGVQED TCG
Sbjct: 169 NPGVQEDRTCG 179
>pir||T10174 hypothetical protein - castor bean gi|1621268|emb|CAB02653.1|
unknown [Ricinus communis]
Length = 364
Score = 126 bits (317), Expect = 6e-29
Identities = 65/132 (49%), Positives = 85/132 (64%), Gaps = 1/132 (0%)
Frame = +2
Query: 5 KKTRLDGKYALPKWEIKGLVEYITGGPQPGGMYFPVSHGTYAVRLGNEASISQTIKVKPG 184
K T++ GK A+P+WEI G VEYI G + G M V G YAVRLGNEASI Q ++V G
Sbjct: 41 KGTQVIGKNAIPEWEISGFVEYIKSGQKQGDMLLVVPEGAYAVRLGNEASIKQRMRVIKG 100
Query: 185 QWYALIIGASRTCAQDEVLRISVPWQTGDIPLQTLYSLNG-*CYCLGIQGALLRVIKVTF 361
+Y++ A+RTCAQ+E L +SV G +P+QT+YS NG Y Q A + + +
Sbjct: 101 MYYSITFSAARTCAQEEKLNVSVSPDWGVLPMQTMYSSNGWDSYAWAFQ-AEFQYVDLVI 159
Query: 362 HNPGVQEDPTCG 397
HNPGV+EDP CG
Sbjct: 160 HNPGVEEDPACG 171
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,984,682
Number of Sequences: 1393205
Number of extensions: 8644642
Number of successful extensions: 20064
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 19436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20033
length of database: 448,689,247
effective HSP length: 108
effective length of database: 298,223,107
effective search space used: 7157354568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
