Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003561A_C01 KMC003561A_c01
(486 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_011665.1| Hypothetical ORF; Ygr149wp [Saccharomyces cerev... 35 0.44
ref|XP_235886.1| similar to ovarian cancer related tumor marker ... 31 8.3
>ref|NP_011665.1| Hypothetical ORF; Ygr149wp [Saccharomyces cerevisiae]
gi|1351821|sp|P48236|YG3L_YEAST HYPOTHETICAL 51.6 KDA
PROTEIN IN RPL24B-RSR1 INTERGENIC REGION
gi|2132618|pir||S60440 probable membrane protein YGR149w
- yeast (Saccharomyces cerevisiae)
gi|1045255|emb|CAA59807.1| ORF G6639 [Saccharomyces
cerevisiae] gi|1323252|emb|CAA97163.1| ORF YGR149w
[Saccharomyces cerevisiae]
Length = 432
Score = 35.0 bits (79), Expect = 0.44
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Frame = -1
Query: 369 STLSRSENYKTQFQ-YKTVSSRKSETNTQTHHLGKGRTQRRLSREI*ETREKALELISSL 193
S LS++E F+ ++ + HHL + R+ +L + + +AL+ I +L
Sbjct: 41 SHLSKAEQKLRNFEGFRRRKPHHEHDSHHPHHLNRSRSFLQLE----DFKVRALQRIRNL 96
Query: 192 GNRHESVFHRSSSFLSL*SYPWKWIANFSFVGIRTSCFDA--HVIYLISF 49
+S+F ++SS L YP+ + N F+G F HV Y I F
Sbjct: 97 DKPLDSIFFKNSSRLEKAFYPFT-LFNIFFIGFLMGRFPEWFHVYYTILF 145
>ref|XP_235886.1| similar to ovarian cancer related tumor marker CA125 [Homo sapiens]
[Rattus norvegicus]
Length = 9088
Score = 30.8 bits (68), Expect = 8.3
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = -1
Query: 375 ALSTLSRSENYKTQFQYKTVSSRKSETNTQTHHLGKGRTQRRLSREI*ETREKALELISS 196
++ T S +ENY + + TN H GKG T LS I A E++SS
Sbjct: 4791 SMDTSSHTENYSVTSTFDKSIDQAGSTNPWNTHTGKGSTSGTLSSII---STSAPEMMSS 4847
Query: 195 L-GNRHESVFHRSSSFLS 145
+ N+ S ++F+S
Sbjct: 4848 IPKNQTSSATQSITTFIS 4865
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 395,403,640
Number of Sequences: 1393205
Number of extensions: 7994644
Number of successful extensions: 15694
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 15354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15688
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
