Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003560A_C01 KMC003560A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197494.1| putative protein; protein id: At5g19940.1, supp... 98 7e-20
ref|NP_189236.2| unknown protein; protein id: At3g26070.1, suppo... 34 1.2
dbj|BAB01070.1| gene_id:MPE11.24~unknown protein [Arabidopsis th... 34 1.2
ref|NP_488737.1| fibrillin [Nostoc sp. PCC 7120] gi|25354851|pir... 34 1.6
ref|NP_440481.1| unknown protein [Synechocystis sp. PCC 6803] gi... 33 3.5
>ref|NP_197494.1| putative protein; protein id: At5g19940.1, supported by cDNA:
32193., supported by cDNA: gi_15529231, supported by
cDNA: gi_16974384 [Arabidopsis thaliana]
gi|15529232|gb|AAK97710.1| AT5g19940/F28I16_90
[Arabidopsis thaliana] gi|16974385|gb|AAL31118.1|
AT5g19940/F28I16_90 [Arabidopsis thaliana]
gi|21592750|gb|AAM64699.1| unknown [Arabidopsis
thaliana]
Length = 239
Score = 98.2 bits (243), Expect = 7e-20
Identities = 45/59 (76%), Positives = 55/59 (92%)
Frame = -3
Query: 586 KALDTEWIQVVFEAPELKLGSWEVQYGGQSEVKLRITYVDEKIRLGLGSRGSLFVFQRR 410
KALD+EW+QV+FE PE+K+GS E +YG +SEVKLRITYVDEK+RLGLGS+GSLFVF+RR
Sbjct: 180 KALDSEWVQVIFEPPEIKVGSLEFKYGFESEVKLRITYVDEKLRLGLGSKGSLFVFRRR 238
>ref|NP_189236.2| unknown protein; protein id: At3g26070.1, supported by cDNA:
gi_17065225, supported by cDNA: gi_20260061 [Arabidopsis
thaliana] gi|17065226|gb|AAL32767.1| Unknown protein
[Arabidopsis thaliana] gi|20260062|gb|AAM13378.1|
unknown protein [Arabidopsis thaliana]
Length = 217
Score = 34.3 bits (77), Expect = 1.2
Identities = 18/57 (31%), Positives = 35/57 (60%)
Frame = -3
Query: 586 KALDTEWIQVVFEAPELKLGSWEVQYGGQSEVKLRITYVDEKIRLGLGSRGSLFVFQ 416
K L+++ + V + ++ LG ++ + +L ITYVDE++RL G +G+LF+ +
Sbjct: 152 KPLNSKKVAVKLQVFKI-LGFIPIKAPDSARGELEITYVDEELRLSRGDKGNLFILK 207
>dbj|BAB01070.1| gene_id:MPE11.24~unknown protein [Arabidopsis thaliana]
gi|17473675|gb|AAL38294.1| unknown protein [Arabidopsis
thaliana] gi|20148657|gb|AAM10219.1| unknown protein
[Arabidopsis thaliana]
Length = 242
Score = 34.3 bits (77), Expect = 1.2
Identities = 18/57 (31%), Positives = 35/57 (60%)
Frame = -3
Query: 586 KALDTEWIQVVFEAPELKLGSWEVQYGGQSEVKLRITYVDEKIRLGLGSRGSLFVFQ 416
K L+++ + V + ++ LG ++ + +L ITYVDE++RL G +G+LF+ +
Sbjct: 177 KPLNSKKVAVKLQVFKI-LGFIPIKAPDSARGELEITYVDEELRLSRGDKGNLFILK 232
>ref|NP_488737.1| fibrillin [Nostoc sp. PCC 7120] gi|25354851|pir||AI2392 fibrillin
[imported] - Nostoc sp. (strain PCC 7120)
gi|17133834|dbj|BAB76396.1| fibrillin [Nostoc sp. PCC
7120]
Length = 183
Score = 33.9 bits (76), Expect = 1.6
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = -3
Query: 487 LRITYVDEKIRLGLGSRGSLFVFQR 413
L ITY+DE +R+G G GSLF+ Q+
Sbjct: 153 LDITYLDETLRIGRGGDGSLFILQK 177
>ref|NP_440481.1| unknown protein [Synechocystis sp. PCC 6803] gi|7470324|pir||S75247
hypothetical protein slr1024 - Synechocystis sp. (strain
PCC 6803) gi|1652238|dbj|BAA17161.1|
ORF_ID:slr1024~unknown protein [Synechocystis sp. PCC
6803]
Length = 213
Score = 32.7 bits (73), Expect = 3.5
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -3
Query: 487 LRITYVDEKIRLGLGSRGSLFVFQR 413
L ITY+D+ +R+G G GSLFV +
Sbjct: 183 LEITYLDDDLRIGRGGEGSLFVLSK 207
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,429,640
Number of Sequences: 1393205
Number of extensions: 8946781
Number of successful extensions: 16661
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16650
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
