Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003556A_C01 KMC003556A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191227.1| putative protein; protein id: At3g56680.1, supp... 74 1e-12
ref|NP_565947.1| expressed protein; protein id: At2g40960.1, sup... 71 7e-12
gb|AAM64355.1| unknown [Arabidopsis thaliana] 71 7e-12
ref|NP_680299.1| hypothetical protein; protein id: At5g33406.1 [... 42 0.003
ref|NP_568149.1| putative protein; protein id: At5g05100.1, supp... 39 0.048
>ref|NP_191227.1| putative protein; protein id: At3g56680.1, supported by cDNA:
27753., supported by cDNA: gi_18377850 [Arabidopsis
thaliana] gi|11358426|pir||T51256 hypothetical protein
T8M16_10 - Arabidopsis thaliana
gi|9662987|emb|CAC00731.1| putative protein [Arabidopsis
thaliana] gi|18377851|gb|AAL67112.1| AT3g56680/T8M16_10
[Arabidopsis thaliana] gi|21435993|gb|AAM51574.1|
AT3g56680/T8M16_10 [Arabidopsis thaliana]
gi|21555368|gb|AAM63842.1| unknown [Arabidopsis
thaliana]
Length = 353
Score = 73.6 bits (179), Expect = 1e-12
Identities = 38/83 (45%), Positives = 47/83 (55%)
Frame = -3
Query: 520 YDTTFNQLVQMPPTQASLGYIPPSSPIMSPFCNGGLNQTPRDPAYLQWPSPTIMYAHSYD 341
Y+ F Q+P A LG+ P S IMSP+ T D Y+ WP+ +MYAH Y+
Sbjct: 276 YEMGFTGYNQIPSPPAPLGFGPHPSSIMSPY------GTTMDAMYMHWPNAAMMYAHPYE 329
Query: 340 PFRHAVYQAPFGQQPLSFDYSQN 272
FR+ QA F QQPLSFDY QN
Sbjct: 330 QFRNGSLQAQFVQQPLSFDYMQN 352
>ref|NP_565947.1| expressed protein; protein id: At2g40960.1, supported by cDNA:
2337. [Arabidopsis thaliana] gi|20196933|gb|AAB86456.2|
expressed protein [Arabidopsis thaliana]
gi|20197117|gb|AAM14924.1| expressed protein
[Arabidopsis thaliana]
Length = 351
Score = 71.2 bits (173), Expect = 7e-12
Identities = 40/85 (47%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = -3
Query: 520 YDTTFNQLVQMPPTQASLGYIPPSSPIMSPFCNGGLNQTPRDPA-YLQWPSPT-IMYAHS 347
YD F P +LG +MSP GLNQ RD A Y+QWP+ +MY HS
Sbjct: 270 YDMGFRGYSPTAPPSLNLG----QHSVMSPCVTTGLNQPSRDAAMYMQWPNAAAVMYTHS 325
Query: 346 YDPFRHAVYQAPFGQQPLSFDYSQN 272
YD FR++ +QA F QPLSFDY QN
Sbjct: 326 YDHFRNSPFQAQFYPQPLSFDYMQN 350
>gb|AAM64355.1| unknown [Arabidopsis thaliana]
Length = 351
Score = 71.2 bits (173), Expect = 7e-12
Identities = 40/85 (47%), Positives = 48/85 (56%), Gaps = 2/85 (2%)
Frame = -3
Query: 520 YDTTFNQLVQMPPTQASLGYIPPSSPIMSPFCNGGLNQTPRDPA-YLQWPSPT-IMYAHS 347
YD F P +LG +MSP GLNQ RD A Y+QWP+ +MY HS
Sbjct: 270 YDMGFRGYSPTAPPSLNLG----QHSVMSPCVTTGLNQPSRDAAMYMQWPNAAAVMYTHS 325
Query: 346 YDPFRHAVYQAPFGQQPLSFDYSQN 272
YD FR++ +QA F QPLSFDY QN
Sbjct: 326 YDHFRNSPFQAQFYPQPLSFDYMQN 350
>ref|NP_680299.1| hypothetical protein; protein id: At5g33406.1 [Arabidopsis
thaliana]
Length = 485
Score = 42.4 bits (98), Expect = 0.003
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = -3
Query: 493 QMPPTQASLGYIPPSSPIMSPFCNGGLNQTPRDPAYLQWPSPTIMYAHSYDPFRHAVYQ 317
Q+P A LG+ PP S MSP+ T D Y+ P+ +MYAH Y+ R+ Q
Sbjct: 422 QIPSIPAPLGFGPPPSSTMSPY------GTTMDAMYMHLPNAAMMYAHPYEQLRNGPLQ 474
>ref|NP_568149.1| putative protein; protein id: At5g05100.1, supported by cDNA:
gi_16649096 [Arabidopsis thaliana]
gi|16649097|gb|AAL24400.1| Unknown protein [Arabidopsis
thaliana] gi|21389629|gb|AAM48013.1| unknown protein
[Arabidopsis thaliana]
Length = 324
Score = 38.5 bits (88), Expect = 0.048
Identities = 23/60 (38%), Positives = 30/60 (49%), Gaps = 5/60 (8%)
Frame = -3
Query: 493 QMPPTQASLGYIPPSSPIMSPFCNGGLNQTPRDPAYLQWPSPTIMYAHSYDP-----FRH 329
QMP TQASL Y P +P M+ P+Y +WPS T+ YA + + FRH
Sbjct: 274 QMPRTQASLNYGHPLNPAMTA------------PSYTEWPSATMTYAQTLNASDVHHFRH 321
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,770,181
Number of Sequences: 1393205
Number of extensions: 9354044
Number of successful extensions: 25010
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 23367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24787
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
