Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003554A_C02 KMC003554A_c02
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201240.1| FKBP-type peptidyl-prolyl cis-trans isomerase, ... 39 0.032
gb|AAM60880.1| immunophilin [Arabidopsis thaliana] 39 0.032
pir||T12197 immunophilin - fava bean gi|2104959|gb|AAB57848.1| i... 39 0.041
ref|XP_139311.1| similar to hypothetical protein FLJ12547 [Homo ... 33 2.3
gb|AAA32122.1| cytochrome c oxidase III gi|447158|prf||1913438A ... 32 6.6
>ref|NP_201240.1| FKBP-type peptidyl-prolyl cis-trans isomerase, putative; protein
id: At5g64350.1, supported by cDNA: 10243., supported by
cDNA: gi_16649116, supported by cDNA: gi_20148470
[Arabidopsis thaliana] gi|2104957|gb|AAB57847.1|
immunophilin [Arabidopsis thaliana]
gi|16649117|gb|AAL24410.1| immunophilin [Arabidopsis
thaliana] gi|20148471|gb|AAM10126.1| immunophilin
[Arabidopsis thaliana]
Length = 112
Score = 39.3 bits (90), Expect = 0.032
Identities = 16/22 (72%), Positives = 17/22 (76%)
Frame = -3
Query: 300 ICRQGCSLIYAYGAGGFPAWGI 235
+ R CS YAYGAGGFPAWGI
Sbjct: 75 VARLRCSSDYAYGAGGFPAWGI 96
>gb|AAM60880.1| immunophilin [Arabidopsis thaliana]
Length = 112
Score = 39.3 bits (90), Expect = 0.032
Identities = 16/22 (72%), Positives = 17/22 (76%)
Frame = -3
Query: 300 ICRQGCSLIYAYGAGGFPAWGI 235
+ R CS YAYGAGGFPAWGI
Sbjct: 75 VARLRCSSDYAYGAGGFPAWGI 96
>pir||T12197 immunophilin - fava bean gi|2104959|gb|AAB57848.1| immunophilin
[Vicia faba]
Length = 112
Score = 38.9 bits (89), Expect = 0.041
Identities = 16/22 (72%), Positives = 17/22 (76%)
Frame = -3
Query: 300 ICRQGCSLIYAYGAGGFPAWGI 235
+ R CS YAYGAGGFPAWGI
Sbjct: 75 VARLRCSPDYAYGAGGFPAWGI 96
>ref|XP_139311.1| similar to hypothetical protein FLJ12547 [Homo sapiens] [Mus
musculus]
Length = 792
Score = 33.1 bits (74), Expect = 2.3
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Frame = -1
Query: 395 IMVAS*CCCLYYLTLAVIC-TVLIYIQCIKIYSFVGKVAA*FMLMVLVAFLLGALIC*TV 219
+ V S C C +T+ + C +V + QC + + +L + L C +V
Sbjct: 482 VPVLSQCACT--VTVCLCCQSVPVLSQCACAVTVCLYCQSVPVLSQCACTVTVCLYCHSV 539
Query: 218 AVLPNCCC-VAV*LFCHN---FMSCCCLTTFKELEL 123
VL C C VAV L+CH+ C C T+ L +
Sbjct: 540 PVLSQCACTVAVCLYCHSVPVLSQCACTVTWNSLRM 575
>gb|AAA32122.1| cytochrome c oxidase III gi|447158|prf||1913438A cytochrome c
oxidase
Length = 288
Score = 31.6 bits (70), Expect = 6.6
Identities = 24/88 (27%), Positives = 37/88 (41%), Gaps = 8/88 (9%)
Frame = -1
Query: 377 CCCLYYLTLAVICTVL-------IYIQCIKIYSFVGKVAA*FML-MVLVAFLLGALIC*T 222
C CL L L + C L + ++CI+ Y F+ + + F+L M L G +
Sbjct: 58 CICLLLLLLDLFCDFLRGLFDFCVLLRCIQ-YCFLWFLCSEFVLFMAFFVVLFGLCLF-- 114
Query: 221 VAVLPNCCCVAV*LFCHNFMSCCCLTTF 138
CC +FC +M CC L +
Sbjct: 115 ------LCCEFAFVFCLPYMFCCLLCDY 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 423,643,824
Number of Sequences: 1393205
Number of extensions: 8526581
Number of successful extensions: 20004
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19904
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
