Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003553A_C02 KMC003553A_c02
(722 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181321.1| hypothetical protein; protein id: At2g37850.1 [... 85 1e-15
gb|AAM14087.1| unknown protein [Arabidopsis thaliana] 85 1e-15
ref|NP_190961.1| putative protein; protein id: At3g53930.1 [Arab... 80 4e-14
dbj|BAC43172.1| unknown protein [Arabidopsis thaliana] gi|290290... 80 4e-14
pir||T47988 serine/threonine-protein kinase-like protein - Arabi... 55 1e-06
>ref|NP_181321.1| hypothetical protein; protein id: At2g37850.1 [Arabidopsis
thaliana] gi|25408568|pir||H84797 hypothetical protein
At2g37850 [imported] - Arabidopsis thaliana
Length = 447
Score = 84.7 bits (208), Expect = 1e-15
Identities = 43/66 (65%), Positives = 51/66 (77%)
Frame = -2
Query: 631 VEELMGEMESAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNTDRYRLRNYIDILNNRQD 452
V+E+MG+ E+A YSKAVRLLVFLLVE P LILNPP SLTN+ RYRLR YID L+ R
Sbjct: 363 VKEVMGDTENAGNQYSKAVRLLVFLLVEAPMLILNPPLSLTNSVRYRLRTYIDFLSRRLK 422
Query: 451 YSRSQR 434
+ +S R
Sbjct: 423 HLQSHR 428
>gb|AAM14087.1| unknown protein [Arabidopsis thaliana]
Length = 733
Score = 84.7 bits (208), Expect = 1e-15
Identities = 43/66 (65%), Positives = 51/66 (77%)
Frame = -2
Query: 631 VEELMGEMESAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNTDRYRLRNYIDILNNRQD 452
V+E+MG+ E+A YSKAVRLLVFLLVE P LILNPP SLTN+ RYRLR YID L+ R
Sbjct: 649 VKEVMGDTENAGNQYSKAVRLLVFLLVEAPMLILNPPLSLTNSVRYRLRTYIDFLSRRLK 708
Query: 451 YSRSQR 434
+ +S R
Sbjct: 709 HLQSHR 714
>ref|NP_190961.1| putative protein; protein id: At3g53930.1 [Arabidopsis thaliana]
gi|11357820|pir||T45933 hypothetical protein F5K20.230 -
Arabidopsis thaliana gi|7630013|emb|CAB88355.1| putative
protein [Arabidopsis thaliana]
Length = 691
Score = 79.7 bits (195), Expect = 4e-14
Identities = 41/66 (62%), Positives = 50/66 (75%)
Frame = -2
Query: 631 VEELMGEMESAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNTDRYRLRNYIDILNNRQD 452
V+E+MG+ E+A LYSKAVRLLVFL VE +LILNPP +LTN+ RYRLR YID L R
Sbjct: 618 VDEVMGDAENAGNLYSKAVRLLVFLAVEAQTLILNPPLTLTNSVRYRLRTYIDSLITRLK 677
Query: 451 YSRSQR 434
+ +S R
Sbjct: 678 HLQSHR 683
>dbj|BAC43172.1| unknown protein [Arabidopsis thaliana] gi|29029002|gb|AAO64880.1|
At3g53930 [Arabidopsis thaliana]
Length = 659
Score = 79.7 bits (195), Expect = 4e-14
Identities = 41/66 (62%), Positives = 50/66 (75%)
Frame = -2
Query: 631 VEELMGEMESAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNTDRYRLRNYIDILNNRQD 452
V+E+MG+ E+A LYSKAVRLLVFL VE +LILNPP +LTN+ RYRLR YID L R
Sbjct: 586 VDEVMGDAENAGNLYSKAVRLLVFLAVEAQTLILNPPLTLTNSVRYRLRTYIDSLITRLK 645
Query: 451 YSRSQR 434
+ +S R
Sbjct: 646 HLQSHR 651
>pir||T47988 serine/threonine-protein kinase-like protein - Arabidopsis thaliana
gi|6899894|emb|CAB71903.1| serine/threonine-protein
kinase-like protein [Arabidopsis thaliana]
Length = 648
Score = 54.7 bits (130), Expect = 1e-06
Identities = 28/60 (46%), Positives = 38/60 (62%)
Frame = -2
Query: 628 EELMGEMESAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNTDRYRLRNYIDILNNRQDY 449
EE + ESAA LY KA+ LL F++ E +L LNP FSLT D+ R+ YI L +R+ +
Sbjct: 588 EEYLSNKESAATLYKKAILLLSFIIEEAVTLSLNPSFSLTPDDKKRILYYISNLQHRRSH 647
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 587,396,129
Number of Sequences: 1393205
Number of extensions: 12296268
Number of successful extensions: 29700
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 28127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29579
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
