Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003550A_C01 KMC003550A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195463.1| putative protein; protein id: At4g37470.1, supp... 109 3e-23
gb|AAM65892.1| unknown [Arabidopsis thaliana] 74 2e-12
ref|NP_566220.1| expressed protein; protein id: At3g03990.1, sup... 73 2e-12
ref|NP_189085.1| unknown protein; protein id: At3g24420.1 [Arabi... 54 1e-06
ref|NP_391290.1| similar to hydrolase [Bacillus subtilis] gi|745... 50 3e-05
>ref|NP_195463.1| putative protein; protein id: At4g37470.1, supported by cDNA:
gi_15810302, supported by cDNA: gi_20259140 [Arabidopsis
thaliana] gi|7450663|pir||T04741 hypothetical protein
F6G17.120 - Arabidopsis thaliana
gi|4468813|emb|CAB38214.1| putative protein [Arabidopsis
thaliana] gi|7270729|emb|CAB80412.1| putative protein
[Arabidopsis thaliana] gi|15810303|gb|AAL07039.1|
unknown protein [Arabidopsis thaliana]
gi|20259141|gb|AAM14286.1| unknown protein [Arabidopsis
thaliana]
Length = 270
Score = 109 bits (272), Expect = 3e-23
Identities = 53/74 (71%), Positives = 63/74 (84%)
Frame = -2
Query: 581 QSDMRGILSLVTVPCHIIQAQKDMAVPVVVSEFLHQHLGGVSIVEVMATDGHLPQLSSPD 402
QSDMR IL VTVPCHI+Q+ KD+AVPVVVSE+LH +LG S+VEV+ +DGHLPQLSSPD
Sbjct: 195 QSDMRQILPFVTVPCHILQSVKDLAVPVVVSEYLHANLGCESVVEVIPSDGHLPQLSSPD 254
Query: 401 IVIPVLLKHIHLDI 360
VIPV+L+HI DI
Sbjct: 255 SVIPVILRHIRNDI 268
>gb|AAM65892.1| unknown [Arabidopsis thaliana]
Length = 267
Score = 73.6 bits (179), Expect = 2e-12
Identities = 33/58 (56%), Positives = 44/58 (74%)
Frame = -2
Query: 578 SDMRGILSLVTVPCHIIQAQKDMAVPVVVSEFLHQHLGGVSIVEVMATDGHLPQLSSP 405
SD+RG+L LV VP +IQ KD++VP V+E+L HLGG + VE + T+GHLPQLS+P
Sbjct: 197 SDLRGVLGLVRVPTCVIQTAKDVSVPASVAEYLRSHLGGETTVETLKTEGHLPQLSAP 254
>ref|NP_566220.1| expressed protein; protein id: At3g03990.1, supported by cDNA:
6052., supported by cDNA: gi_17381266, supported by
cDNA: gi_20453358 [Arabidopsis thaliana]
gi|6223644|gb|AAF05858.1|AC011698_9 unknown protein
[Arabidopsis thaliana] gi|17381267|gb|AAL36052.1|
AT3g03990/T11I18_10 [Arabidopsis thaliana]
gi|20453359|gb|AAM19918.1| AT3g03990/T11I18_10
[Arabidopsis thaliana]
Length = 267
Score = 73.2 bits (178), Expect = 2e-12
Identities = 33/58 (56%), Positives = 44/58 (74%)
Frame = -2
Query: 578 SDMRGILSLVTVPCHIIQAQKDMAVPVVVSEFLHQHLGGVSIVEVMATDGHLPQLSSP 405
SD+RG+L LV VP +IQ KD++VP V+E+L HLGG + VE + T+GHLPQLS+P
Sbjct: 197 SDLRGVLGLVRVPTCVIQTAKDVSVPASVAEYLRSHLGGDTTVETLKTEGHLPQLSAP 254
>ref|NP_189085.1| unknown protein; protein id: At3g24420.1 [Arabidopsis thaliana]
gi|11994705|dbj|BAB02943.1| hydrolase-like protein
[Arabidopsis thaliana]
Length = 273
Score = 53.9 bits (128), Expect = 1e-06
Identities = 27/58 (46%), Positives = 38/58 (64%), Gaps = 1/58 (1%)
Frame = -2
Query: 578 SDMRGILSLVTVPCHIIQAQKDMAVPVVVSEFLHQHLGGVSIVEVMA-TDGHLPQLSS 408
SD R IL V+VPCH+IQ D+ VPV V+ F+ + + G S VE++ GH PQ++S
Sbjct: 202 SDEREILGQVSVPCHVIQPGNDVVVPVSVAYFMQEKIKGKSTVEIIEDAIGHFPQMTS 259
>ref|NP_391290.1| similar to hydrolase [Bacillus subtilis] gi|7450662|pir||H70038
probable hydrolase yvfQ - Bacillus subtilis
gi|1945717|emb|CAB08011.1| hypothetical protein
[Bacillus subtilis] gi|2635923|emb|CAB15415.1| yvfQ
[Bacillus subtilis subsp. subtilis str. 168]
Length = 269
Score = 49.7 bits (117), Expect = 3e-05
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = -2
Query: 578 SDMRGILSLVTVPCHIIQAQKDMAVPVVVSEFLHQHLGGVSIVEVMATDGHLPQLSSPDI 399
SD R LS VTVP I+Q D+ P V +++HQHL S ++ M GH P +S PD
Sbjct: 198 SDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHL-PYSSLKQMEARGHCPHMSHPDE 256
Query: 398 VIPVL 384
I ++
Sbjct: 257 TIQLI 261
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 512,121,947
Number of Sequences: 1393205
Number of extensions: 11293177
Number of successful extensions: 38572
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 33964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38060
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
