Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003549A_C02 KMC003549A_c02
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194917.1| putative protein; protein id: At4g31890.1 [Arab... 138 5e-32
ref|NP_180085.1| hypothetical protein; protein id: At2g25130.1 [... 103 1e-21
ref|NP_180312.1| hypothetical protein; protein id: At2g27430.1 [... 50 2e-05
gb|AAO11674.1| hypothetical protein [Arabidopsis thaliana] 50 2e-05
ref|XP_229959.1| similar to KIAA1902 protein [Homo sapiens] [Rat... 35 0.46
>ref|NP_194917.1| putative protein; protein id: At4g31890.1 [Arabidopsis thaliana]
gi|7485381|pir||T06311 hypothetical protein F11C18.90 -
Arabidopsis thaliana gi|4584528|emb|CAB40759.1| putative
protein [Arabidopsis thaliana]
gi|7270092|emb|CAB79907.1| putative protein [Arabidopsis
thaliana]
Length = 518
Score = 138 bits (347), Expect = 5e-32
Identities = 79/130 (60%), Positives = 97/130 (73%), Gaps = 3/130 (2%)
Frame = -1
Query: 550 SSLLELSLLGTTLAQKRASRMLGSLRVDKGKYV---SGSCGGNLGATVSAPICGSSSSCA 380
S+LLEL+LLG+ LAQKRASR+L LRVDKGK V +GSCG +SAPI G+ +
Sbjct: 403 SALLELTLLGSALAQKRASRILECLRVDKGKQVLDSTGSCGA-----LSAPIYGTRDNGL 457
Query: 379 KPDGGGKEGSEEDEDMMMSDEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFRSLT 200
E+ D+MMS+E+KAVKQLVQQSLQ+NM++IVKRANLP D VPS+HF+SL+
Sbjct: 458 ---------DHEENDLMMSEERKAVKQLVQQSLQSNMKRIVKRANLPQDFVPSEHFKSLS 508
Query: 199 SSSTSKSLPF 170
SSTSKSLPF
Sbjct: 509 LSSTSKSLPF 518
>ref|NP_180085.1| hypothetical protein; protein id: At2g25130.1 [Arabidopsis
thaliana] gi|25412282|pir||F84644 hypothetical protein
At2g25130 [imported] - Arabidopsis thaliana
gi|23092565|gb|AAN08439.1| hypothetical protein
[Arabidopsis thaliana]
Length = 468
Score = 103 bits (258), Expect = 1e-21
Identities = 70/128 (54%), Positives = 81/128 (62%), Gaps = 1/128 (0%)
Frame = -1
Query: 550 SSLLELSLLGTTLAQKRASRMLGSLRV-DKGKYVSGSCGGNLGATVSAPICGSSSSCAKP 374
SSLLEL+L+G+ LAQKRASR+L LRV DKGK VS API G+SS
Sbjct: 370 SSLLELTLVGSPLAQKRASRVLECLRVVDKGKQVS------------APIYGTSSL---- 413
Query: 373 DGGGKEGSEEDEDMMMSDEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFRSLTSS 194
G E D+ M+DE+KAVKQLVQQSLQ+NM++IVKRANLPHD V TS
Sbjct: 414 ------GRERGHDLRMTDERKAVKQLVQQSLQSNMKRIVKRANLPHDFV-------TTSQ 460
Query: 193 STSKSLPF 170
SKSL F
Sbjct: 461 HFSKSLTF 468
>ref|NP_180312.1| hypothetical protein; protein id: At2g27430.1 [Arabidopsis
thaliana] gi|25407895|pir||G84672 hypothetical protein
At2g27430 [imported] - Arabidopsis thaliana
gi|4314385|gb|AAD15595.1| hypothetical protein
[Arabidopsis thaliana]
Length = 282
Score = 50.1 bits (118), Expect = 2e-05
Identities = 43/125 (34%), Positives = 62/125 (49%)
Frame = -1
Query: 544 LLELSLLGTTLAQKRASRMLGSLRVDKGKYVSGSCGGNLGATVSAPICGSSSSCAKPDGG 365
LLE+SLLG+ L QKRA ++L + ++ + G G +P GS S
Sbjct: 177 LLEVSLLGSPLVQKRAVKLLQWFKDERNVRMGPHSGPQTGWV--SPGMGSPMS----PRS 230
Query: 364 GKEGSEEDEDMMMSDEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFRSLTSSSTS 185
G+EG +K +K LV+QSL NM I +R NL + S +SL S++S
Sbjct: 231 GEEG------------RKMMKNLVKQSLYKNMEMITRRGNLDME-SESCRLKSLIISTSS 277
Query: 184 KSLPF 170
KSL +
Sbjct: 278 KSLTY 282
>gb|AAO11674.1| hypothetical protein [Arabidopsis thaliana]
Length = 438
Score = 50.1 bits (118), Expect = 2e-05
Identities = 43/125 (34%), Positives = 62/125 (49%)
Frame = -1
Query: 544 LLELSLLGTTLAQKRASRMLGSLRVDKGKYVSGSCGGNLGATVSAPICGSSSSCAKPDGG 365
LLE+SLLG+ L QKRA ++L + ++ + G G +P GS S
Sbjct: 333 LLEVSLLGSPLVQKRAVKLLQWFKDERNVRMGPHSGPQTGWV--SPGMGSPMS----PRS 386
Query: 364 GKEGSEEDEDMMMSDEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFRSLTSSSTS 185
G+EG +K +K LV+QSL NM I +R NL + S +SL S++S
Sbjct: 387 GEEG------------RKMMKNLVKQSLYKNMEMITRRGNLDME-SESCRLKSLIISTSS 433
Query: 184 KSLPF 170
KSL +
Sbjct: 434 KSLTY 438
>ref|XP_229959.1| similar to KIAA1902 protein [Homo sapiens] [Rattus norvegicus]
Length = 794
Score = 35.4 bits (80), Expect = 0.46
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 339 SSSSDPSFPPPSGFAQEDEEPQIG--AETV-APKFPPQLPETYFPLSTLKLPNIL 494
++SS PS PPP + P+ G AETV AP PP P + PL P ++
Sbjct: 289 AASSGPSVPPPPPLPPSSDTPEAGPAAETVPAPPLPPPPPPSAPPLPGTSSPTVV 343
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 453,899,115
Number of Sequences: 1393205
Number of extensions: 9550372
Number of successful extensions: 39636
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 35306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38935
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
