Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003548A_C01 KMC003548A_c01
(661 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563883.1| expressed protein; protein id: At1g11020.1, sup... 258 5e-68
gb|AAM65602.1| unknown [Arabidopsis thaliana] 254 5e-67
pir||B86244 hypothetical protein [imported] - Arabidopsis thalia... 236 2e-61
dbj|BAB21289.1| P0410E03.20 [Oryza sativa (japonica cultivar-gro... 186 2e-46
ref|NP_179802.1| hypothetical protein; protein id: At2g22120.1 [... 95 9e-19
>ref|NP_563883.1| expressed protein; protein id: At1g11020.1, supported by cDNA:
40765. [Arabidopsis thaliana]
gi|26449897|dbj|BAC42070.1| unknown protein [Arabidopsis
thaliana] gi|28827244|gb|AAO50466.1| unknown protein
[Arabidopsis thaliana]
Length = 321
Score = 258 bits (659), Expect = 5e-68
Identities = 118/134 (88%), Positives = 126/134 (93%)
Frame = -1
Query: 661 PIPFYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASVEACF 482
PIPFYYCIGV++FFVL GF G+ILHCS+LN NDPRMAGCQNCCYGWG+LDCFPAS+EACF
Sbjct: 188 PIPFYYCIGVISFFVLTGFLGIILHCSALNGNDPRMAGCQNCCYGWGVLDCFPASMEACF 247
Query: 481 ALVVVFVVIFAILGIAYGFLATTMAIQRIWQRHYHILTKRELTKEYIVEDLGGCYSPPKL 302
ALVVVFVVIFAILG+AYGFLA TMAIQRIWQRHYHILTKRELTKEYIVEDL G Y+PPKL
Sbjct: 248 ALVVVFVVIFAILGLAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGSYTPPKL 307
Query: 301 DPEHEARLKMLKLL 260
D EHE RLKMLKLL
Sbjct: 308 DAEHEGRLKMLKLL 321
>gb|AAM65602.1| unknown [Arabidopsis thaliana]
Length = 320
Score = 254 bits (650), Expect = 5e-67
Identities = 117/134 (87%), Positives = 125/134 (92%)
Frame = -1
Query: 661 PIPFYYCIGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASVEACF 482
PIPFYYCIGV++FFVL GF G+ILHCS+LN ND RMAGCQNCCYGWG+LDCFPAS+EACF
Sbjct: 187 PIPFYYCIGVISFFVLTGFLGIILHCSALNGNDRRMAGCQNCCYGWGVLDCFPASMEACF 246
Query: 481 ALVVVFVVIFAILGIAYGFLATTMAIQRIWQRHYHILTKRELTKEYIVEDLGGCYSPPKL 302
ALVVVFVVIFAILG+AYGFLA TMAIQRIWQRHYHILTKRELTKEYIVEDL G Y+PPKL
Sbjct: 247 ALVVVFVVIFAILGLAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGSYTPPKL 306
Query: 301 DPEHEARLKMLKLL 260
D EHE RLKMLKLL
Sbjct: 307 DAEHEGRLKMLKLL 320
>pir||B86244 hypothetical protein [imported] - Arabidopsis thaliana
gi|2252631|gb|AAB65494.1| hypothetical protein;
51018-49636 [Arabidopsis thaliana]
Length = 281
Score = 236 bits (603), Expect = 2e-61
Identities = 109/127 (85%), Positives = 118/127 (92%)
Frame = -1
Query: 640 IGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASVEACFALVVVFV 461
+ V++FFVL GF G+ILHCS+LN NDPRMAGCQNCCYGWG+LDCFPAS+EACFALVVVFV
Sbjct: 155 VRVISFFVLTGFLGIILHCSALNGNDPRMAGCQNCCYGWGVLDCFPASMEACFALVVVFV 214
Query: 460 VIFAILGIAYGFLATTMAIQRIWQRHYHILTKRELTKEYIVEDLGGCYSPPKLDPEHEAR 281
VIFAILG+AYGFLA TMAIQRIWQRHYHILTKRELTKEYIVEDL G Y+PPKLD EHE R
Sbjct: 215 VIFAILGLAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGSYTPPKLDAEHEGR 274
Query: 280 LKMLKLL 260
LKMLKLL
Sbjct: 275 LKMLKLL 281
>dbj|BAB21289.1| P0410E03.20 [Oryza sativa (japonica cultivar-group)]
Length = 269
Score = 186 bits (473), Expect = 2e-46
Identities = 83/115 (72%), Positives = 99/115 (85%)
Frame = -1
Query: 604 FGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASVEACFALVVVFVVIFAILGIAYGF 425
F L CSS N+NDP +AGC+NCCYGWGILD FPAS+EAC AL V+FV++FAILG+AYGF
Sbjct: 156 FSFTLQCSSFNTNDPCLAGCRNCCYGWGILD-FPASIEACLALAVIFVIVFAILGVAYGF 214
Query: 424 LATTMAIQRIWQRHYHILTKRELTKEYIVEDLGGCYSPPKLDPEHEARLKMLKLL 260
A T+A+QRI QRHYHILTKRELTKEY+VEDL GCY+PPK+DPE E RL+ L+L+
Sbjct: 215 FAATVAVQRILQRHYHILTKRELTKEYVVEDLRGCYTPPKMDPEQEQRLRTLQLM 269
>ref|NP_179802.1| hypothetical protein; protein id: At2g22120.1 [Arabidopsis
thaliana] gi|25371329|pir||B84609 hypothetical protein
At2g22120 [imported] - Arabidopsis thaliana
gi|4587585|gb|AAD25813.1| hypothetical protein
[Arabidopsis thaliana]
Length = 252
Score = 94.7 bits (234), Expect = 9e-19
Identities = 52/132 (39%), Positives = 69/132 (51%), Gaps = 5/132 (3%)
Frame = -1
Query: 640 IGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASVEACFALVVVFV 461
+ L FF L+G G ++ C + C+ C + A + F +V +
Sbjct: 121 VRALLFFALLGLSGCVITCYDRRVRNDLAQPCRELCLCCCLGGAGEAGLPLLFITALVIL 180
Query: 460 VIFAILGIAYGFLATTMAIQRIWQRHYHILTKRELTKEYIVEDL-----GGCYSPPKLDP 296
+F ++GI Y L TM QRIWQRHYHIL KR LTKEY+VED+ G +SPP L
Sbjct: 181 GLFTVIGIFYSVLVATMVGQRIWQRHYHILAKRMLTKEYVVEDVDGEMTGSEWSPPALPT 240
Query: 295 EHEARLKMLKLL 260
EH +LK L LL
Sbjct: 241 EHVQQLKTLGLL 252
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 589,147,535
Number of Sequences: 1393205
Number of extensions: 13131284
Number of successful extensions: 38531
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 37019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38509
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
