Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003544A_C01 KMC003544A_c01
(722 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567115.1| putative protein; protein id: At3g61600.1, supp... 137 2e-50
pir||T47952 hypothetical protein F2A19.200 - Arabidopsis thalian... 137 4e-50
ref|NP_566069.1| expressed protein; protein id: At2g46260.1, sup... 138 5e-48
gb|AAM61110.1| unknown [Arabidopsis thaliana] 138 5e-48
pir||F84900 hypothetical protein At2g46260 [imported] - Arabidop... 138 5e-48
>ref|NP_567115.1| putative protein; protein id: At3g61600.1, supported by cDNA:
gi_12006854 [Arabidopsis thaliana]
gi|12006855|gb|AAG44951.1|AF292397_1 POZ/BTB
containing-protein AtPOB1 [Arabidopsis thaliana]
Length = 561
Score = 137 bits (345), Expect(2) = 2e-50
Identities = 67/102 (65%), Positives = 80/102 (77%)
Frame = -1
Query: 710 SASLNSRFVERAYKYRPVKVVEFEVPRQQCVVYLDLKREECAALFPSGRVKSQTFHLCGR 531
SASLN R +ERAYKYRPVKVVEFE+PR QCVVYLDLKREEC LFPSGRV SQ FHL G+
Sbjct: 397 SASLNRRLIERAYKYRPVKVVEFELPRPQCVVYLDLKREECGGLFPSGRVYSQAFHLGGQ 456
Query: 530 KFLLLGACSLNKRGTSRCFELAVGMKKKSSGSFVVDCEFAAR 405
F L C+++++ + CF L +GM++K S SF VD EF+AR
Sbjct: 457 GFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFGVDYEFSAR 498
Score = 84.7 bits (208), Expect(2) = 2e-50
Identities = 36/60 (60%), Positives = 49/60 (81%)
Frame = -2
Query: 403 SRPAKEFVTKYKSHYTFTGGTFVGTGNLFKVTWSKFMAEDSPFFINGVLHLKAEFTVRTL 224
S+PA++F++KYK +YTFTGG VG NLF V W+ F+AEDS +FING+LHL+AE T++ L
Sbjct: 499 SKPAEDFISKYKGNYTFTGGKAVGYRNLFGVPWTSFIAEDSQYFINGILHLRAELTIKRL 558
>pir||T47952 hypothetical protein F2A19.200 - Arabidopsis thaliana
gi|6850851|emb|CAB71090.1| putative protein [Arabidopsis
thaliana]
Length = 545
Score = 137 bits (345), Expect(2) = 4e-50
Identities = 67/102 (65%), Positives = 80/102 (77%)
Frame = -1
Query: 710 SASLNSRFVERAYKYRPVKVVEFEVPRQQCVVYLDLKREECAALFPSGRVKSQTFHLCGR 531
SASLN R +ERAYKYRPVKVVEFE+PR QCVVYLDLKREEC LFPSGRV SQ FHL G+
Sbjct: 381 SASLNRRLIERAYKYRPVKVVEFELPRPQCVVYLDLKREECGGLFPSGRVYSQAFHLGGQ 440
Query: 530 KFLLLGACSLNKRGTSRCFELAVGMKKKSSGSFVVDCEFAAR 405
F L C+++++ + CF L +GM++K S SF VD EF+AR
Sbjct: 441 GFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVSFGVDYEFSAR 482
Score = 83.6 bits (205), Expect(2) = 4e-50
Identities = 35/58 (60%), Positives = 48/58 (82%)
Frame = -2
Query: 403 SRPAKEFVTKYKSHYTFTGGTFVGTGNLFKVTWSKFMAEDSPFFINGVLHLKAEFTVR 230
S+PA++F++KYK +YTFTGG VG NLF V W+ F+AEDS +FING+LHL+AE T++
Sbjct: 483 SKPAEDFISKYKGNYTFTGGKAVGYRNLFGVPWTSFIAEDSQYFINGILHLRAELTIK 540
>ref|NP_566069.1| expressed protein; protein id: At2g46260.1, supported by cDNA:
111153., supported by cDNA: gi_15028122, supported by
cDNA: gi_19310796 [Arabidopsis thaliana]
gi|15028123|gb|AAK76685.1| unknown protein [Arabidopsis
thaliana] gi|19310797|gb|AAL85129.1| unknown protein
[Arabidopsis thaliana] gi|20197378|gb|AAC62880.2|
expressed protein [Arabidopsis thaliana]
Length = 561
Score = 138 bits (347), Expect(2) = 5e-48
Identities = 67/102 (65%), Positives = 81/102 (78%)
Frame = -1
Query: 710 SASLNSRFVERAYKYRPVKVVEFEVPRQQCVVYLDLKREECAALFPSGRVKSQTFHLCGR 531
S S+N RF+ERAYKYRPVKVVEFE+PR QCVVYLDLKREECA LFPSGRV SQ FHL G+
Sbjct: 395 SDSMNRRFIERAYKYRPVKVVEFELPRPQCVVYLDLKREECAGLFPSGRVYSQAFHLGGQ 454
Query: 530 KFLLLGACSLNKRGTSRCFELAVGMKKKSSGSFVVDCEFAAR 405
F L C+++++ + CF L +GM++K + SF VD EFAAR
Sbjct: 455 GFFLSAHCNMDQQSSFHCFGLFLGMQEKGAVSFGVDYEFAAR 496
Score = 75.5 bits (184), Expect(2) = 5e-48
Identities = 32/54 (59%), Positives = 43/54 (79%)
Frame = -2
Query: 391 KEFVTKYKSHYTFTGGTFVGTGNLFKVTWSKFMAEDSPFFINGVLHLKAEFTVR 230
+E+V+KYK +YTFTGG VG NLF + W+ F+AEDS FING+LHL+AE T++
Sbjct: 502 EEYVSKYKGNYTFTGGKAVGYRNLFGIPWTSFIAEDSQHFINGILHLRAELTIK 555
>gb|AAM61110.1| unknown [Arabidopsis thaliana]
Length = 546
Score = 138 bits (347), Expect(2) = 5e-48
Identities = 67/102 (65%), Positives = 81/102 (78%)
Frame = -1
Query: 710 SASLNSRFVERAYKYRPVKVVEFEVPRQQCVVYLDLKREECAALFPSGRVKSQTFHLCGR 531
S S+N RF+ERAYKYRPVKVVEFE+PR QCVVYLDLKREECA LFPSGRV SQ FHL G+
Sbjct: 380 SDSMNRRFIERAYKYRPVKVVEFELPRPQCVVYLDLKREECAGLFPSGRVYSQAFHLGGQ 439
Query: 530 KFLLLGACSLNKRGTSRCFELAVGMKKKSSGSFVVDCEFAAR 405
F L C+++++ + CF L +GM++K + SF VD EFAAR
Sbjct: 440 GFFLSAHCNMDQQSSFHCFGLFLGMQEKGAVSFGVDYEFAAR 481
Score = 75.5 bits (184), Expect(2) = 5e-48
Identities = 32/54 (59%), Positives = 43/54 (79%)
Frame = -2
Query: 391 KEFVTKYKSHYTFTGGTFVGTGNLFKVTWSKFMAEDSPFFINGVLHLKAEFTVR 230
+E+V+KYK +YTFTGG VG NLF + W+ F+AEDS FING+LHL+AE T++
Sbjct: 487 EEYVSKYKGNYTFTGGKAVGYRNLFGIPWTSFIAEDSQHFINGILHLRAELTIK 540
>pir||F84900 hypothetical protein At2g46260 [imported] - Arabidopsis thaliana
Length = 546
Score = 138 bits (347), Expect(2) = 5e-48
Identities = 67/102 (65%), Positives = 81/102 (78%)
Frame = -1
Query: 710 SASLNSRFVERAYKYRPVKVVEFEVPRQQCVVYLDLKREECAALFPSGRVKSQTFHLCGR 531
S S+N RF+ERAYKYRPVKVVEFE+PR QCVVYLDLKREECA LFPSGRV SQ FHL G+
Sbjct: 380 SDSMNRRFIERAYKYRPVKVVEFELPRPQCVVYLDLKREECAGLFPSGRVYSQAFHLGGQ 439
Query: 530 KFLLLGACSLNKRGTSRCFELAVGMKKKSSGSFVVDCEFAAR 405
F L C+++++ + CF L +GM++K + SF VD EFAAR
Sbjct: 440 GFFLSAHCNMDQQSSFHCFGLFLGMQEKGAVSFGVDYEFAAR 481
Score = 75.5 bits (184), Expect(2) = 5e-48
Identities = 32/54 (59%), Positives = 43/54 (79%)
Frame = -2
Query: 391 KEFVTKYKSHYTFTGGTFVGTGNLFKVTWSKFMAEDSPFFINGVLHLKAEFTVR 230
+E+V+KYK +YTFTGG VG NLF + W+ F+AEDS FING+LHL+AE T++
Sbjct: 487 EEYVSKYKGNYTFTGGKAVGYRNLFGIPWTSFIAEDSQHFINGILHLRAELTIK 540
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 629,472,464
Number of Sequences: 1393205
Number of extensions: 13895826
Number of successful extensions: 35461
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 34270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35421
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
