Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003539A_C01 KMC003539A_c01
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193655.1| putative protein; protein id: At4g19200.1, supp... 104 9e-22
gb|AAH05782.1| Unknown (protein for MGC:12025) [Mus musculus] 100 2e-20
ref|NP_197267.1| glycine/proline-rich protein; protein id: At5g1... 100 2e-20
emb|CAB61840.1| putative glycine and proline-rich protein [Sporo... 97 2e-19
ref|NP_568642.1| expressed protein; protein id: At5g45350.1, sup... 86 5e-16
>ref|NP_193655.1| putative protein; protein id: At4g19200.1, supported by cDNA: 8188.
[Arabidopsis thaliana] gi|25407569|pir||A85217
hypothetical protein AT4g19200 [imported] - Arabidopsis
thaliana gi|7268715|emb|CAB78922.1| putative protein
[Arabidopsis thaliana] gi|21595622|gb|AAM66118.1|
unknown [Arabidopsis thaliana]
gi|24417344|gb|AAN60282.1| unknown [Arabidopsis
thaliana] gi|27311843|gb|AAO00887.1| Unknown protein
[Arabidopsis thaliana]
Length = 179
Score = 104 bits (260), Expect = 9e-22
Identities = 59/96 (61%), Positives = 62/96 (64%), Gaps = 18/96 (18%)
Frame = -2
Query: 585 SGH--GGMGAMLAGGAAAAAAAYGAHHVSH------GH-YGHGGYGHG-----GFMPHGK 448
SGH GG+G M+AG A AAAAAYGAHHV H GH GHGGYGH G HGK
Sbjct: 86 SGHSGGGLGGMIAGAAGAAAAAYGAHHVGHASHNPYGHAVGHGGYGHAPAHGFGHGGHGK 145
Query: 447 FKH----GKFKHGKFGKHGKFKHGKFGKHGLFRKWK 352
FKH GKFKHGK GKHG KHG FG G F+KWK
Sbjct: 146 FKHGKHGGKFKHGKHGKHG--KHGMFGGGGKFKKWK 179
>gb|AAH05782.1| Unknown (protein for MGC:12025) [Mus musculus]
Length = 198
Score = 100 bits (248), Expect = 2e-20
Identities = 57/91 (62%), Positives = 60/91 (65%), Gaps = 12/91 (13%)
Frame = -2
Query: 588 SSGHGGMGAMLAGGAAAAAAAYGAHHV---SHGHYGHGG-YGHGGFMPHGKFKHGKFKHG 421
S G G MG MLAGGAAAAAAAYG HH+ SHGH+G GG GH G HG GKFKH
Sbjct: 115 SGGMGAMGGMLAGGAAAAAAAYGVHHLTSGSHGHHGGGGPLGHFGGGHHG----GKFKH- 169
Query: 420 KFGKHGKFKHGKFGKHG--------LFRKWK 352
GKHGKFKHGKFGKHG F+KWK
Sbjct: 170 --GKHGKFKHGKFGKHGGGMFGGGKKFKKWK 198
>ref|NP_197267.1| glycine/proline-rich protein; protein id: At5g17650.1 [Arabidopsis
thaliana] gi|11357316|pir||T51469 glycine/proline-rich
protein - Arabidopsis thaliana
gi|9755790|emb|CAC01909.1| glycine/proline-rich protein
[Arabidopsis thaliana]
Length = 173
Score = 100 bits (248), Expect = 2e-20
Identities = 55/82 (67%), Positives = 63/82 (76%), Gaps = 6/82 (7%)
Frame = -2
Query: 579 HGGMGAMLAGGAAAAAAAYGAHHVSH--GHYG-HGGYGHG-GFMPHGKFKHGKFKHGKFG 412
HGG+GA++AGG AAAA GAHH+SH GHYG H G+G+G G+ HGKFKHGKFKHGKFG
Sbjct: 100 HGGIGAIIAGGVAAAA---GAHHMSHHHGHYGHHHGHGYGYGYHGHGKFKHGKFKHGKFG 156
Query: 411 KHGKF-KH-GKFGKHGLFRKWK 352
KHG F KH GKF F+KWK
Sbjct: 157 KHGMFGKHKGKF-----FKKWK 173
>emb|CAB61840.1| putative glycine and proline-rich protein [Sporobolus stapfianus]
Length = 197
Score = 97.1 bits (240), Expect = 2e-19
Identities = 59/99 (59%), Positives = 64/99 (64%), Gaps = 20/99 (20%)
Frame = -2
Query: 588 SSGHGG--MGAMLAGGAAAAAAAYGAHHVSHGH------------YGHGGYGHGGFMPHG 451
SS HGG MG +LAGGAAAAAAAYGAH +SHGH Y GGYGH G+ HG
Sbjct: 102 SSSHGGGNMG-LLAGGAAAAAAAYGAHKLSHGHSGGHGFPGGHGGYAVGGYGH-GYGGHG 159
Query: 450 KFKHGKFKHGKFGK-HGKFKHGKFGKHGL-----FRKWK 352
KFKHG HGKF HGKFKHGK G HG+ F+KWK
Sbjct: 160 KFKHGHGGHGKFKHGHGKFKHGKHG-HGMFGGGKFKKWK 197
>ref|NP_568642.1| expressed protein; protein id: At5g45350.1, supported by cDNA:
22538., supported by cDNA: gi_15529251 [Arabidopsis
thaliana] gi|2129603|pir||S65780 glycine/proline-rich
protein GPRP - Arabidopsis thaliana
gi|1465364|emb|CAA59059.1| GPRP [Arabidopsis thaliana]
gi|9758725|dbj|BAB09163.1| gene_id:MFC19.1~unknown
protein [Arabidopsis thaliana]
gi|15529252|gb|AAK97720.1| AT5g45350/MFC19_1
[Arabidopsis thaliana] gi|16974403|gb|AAL31127.1|
AT5g45350/MFC19_1 [Arabidopsis thaliana]
gi|21592344|gb|AAM64295.1| unknown [Arabidopsis
thaliana]
Length = 177
Score = 85.9 bits (211), Expect = 5e-16
Identities = 56/95 (58%), Positives = 61/95 (63%), Gaps = 12/95 (12%)
Frame = -2
Query: 600 FSALSSGH-GGMGAMLAGGAAAAAAAYGAHHV---SHGHYGHGGYGHG-------GF-MP 457
+ A SGH GG+G M+AG AAAAYGAHHV SHG YGH YGHG G+
Sbjct: 93 YPAHHSGHAGGIGGMIAG----AAAAYGAHHVAHSSHGPYGHAAYGHGFGHGHGYGYGHG 148
Query: 456 HGKFKHGKFKHGKFGKHGKFKHGKFGKHGLFRKWK 352
HGKFKHG KHGKF KHG KHG FG G F+KWK
Sbjct: 149 HGKFKHG--KHGKF-KHG--KHGMFG-GGKFKKWK 177
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 611,900,513
Number of Sequences: 1393205
Number of extensions: 15023101
Number of successful extensions: 85953
Number of sequences better than 10.0: 528
Number of HSP's better than 10.0 without gapping: 57887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77753
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
