Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003533A_C01 KMC003533A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_671831.1| hypothetical protein; protein id: At2g11623.1 [... 33 1.4
ref|NP_280287.1| cell division cycle protein; Cdc48a [Halobacter... 32 4.1
ref|NP_176317.1| hypothetical protein; protein id: At1g61220.1 [... 32 4.1
pir||A96638 hypothetical protein F11P17.7 [imported] - Arabidops... 32 4.1
gb|ZP_00055704.1| hypothetical protein [Magnetospirillum magneto... 32 5.3
>ref|NP_671831.1| hypothetical protein; protein id: At2g11623.1 [Arabidopsis
thaliana]
Length = 110
Score = 33.5 bits (75), Expect = 1.4
Identities = 19/66 (28%), Positives = 30/66 (44%)
Frame = -2
Query: 474 RRHGWSSISHHHSTRIWSSDNGSSY*CDNVYRTCVDYPSLPIHRAHYNLW*HYPDYHIST 295
RR+GWS ++ S WS G+ N+ TC+ Y + + + D H +
Sbjct: 20 RRYGWSEAANRGSELRWSLPVGARSPVKNLIETCI-YKYMSLEETET----YVEDNHKIS 74
Query: 294 HHVTSP 277
HH+T P
Sbjct: 75 HHLTKP 80
>ref|NP_280287.1| cell division cycle protein; Cdc48a [Halobacterium sp. NRC-1]
gi|25289960|pir||C84300 cell division cycle protein
[imported] - Halobacterium sp. NRC-1
gi|10580959|gb|AAG19767.1| cell division cycle protein;
Cdc48a [Halobacterium sp. NRC-1]
Length = 691
Score = 32.0 bits (71), Expect = 4.1
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -3
Query: 467 MDGAA*AITIQLGSGHLTMDPVTNVTMFTGPVWITLAYPSTE---PIIISGDTTLTI 306
++G A A+ L HL D V +F+G V +TL T P+ ++ DT +T+
Sbjct: 107 LEGDADALARALAGRHLVADDRIAVPLFSGTVVVTLDVEDTTPGGPVTVTADTAITL 163
>ref|NP_176317.1| hypothetical protein; protein id: At1g61220.1 [Arabidopsis
thaliana]
Length = 896
Score = 32.0 bits (71), Expect = 4.1
Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 4/54 (7%)
Frame = -3
Query: 413 MDPVTNVTMFTGPVWITLAYPSTE----PIIISGDTTLTIISPPTMSPRPESVS 264
+D TN T PV T ST P+++ DT++ +PP S RP+ S
Sbjct: 360 LDQATNSTTVDVPVLSTRRTKSTPVRVMPVVLGRDTSMATDTPPVTSTRPDRTS 413
>pir||A96638 hypothetical protein F11P17.7 [imported] - Arabidopsis thaliana
gi|2443881|gb|AAB71474.1| contains beta-transducin motif
[Arabidopsis thaliana]
Length = 1184
Score = 32.0 bits (71), Expect = 4.1
Identities = 18/54 (33%), Positives = 26/54 (47%), Gaps = 4/54 (7%)
Frame = -3
Query: 413 MDPVTNVTMFTGPVWITLAYPSTE----PIIISGDTTLTIISPPTMSPRPESVS 264
+D TN T PV T ST P+++ DT++ +PP S RP+ S
Sbjct: 700 LDQATNSTTVDVPVLSTRRTKSTPVRVMPVVLGRDTSMATDTPPVTSTRPDRTS 753
>gb|ZP_00055704.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 12295
Score = 31.6 bits (70), Expect = 5.3
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = -3
Query: 476 TGDMDGAA*AITIQLGSGHLTMDPVTNVTMFTGPVWITLAYPSTEPIIISGDTTLTIISP 297
TG GA + + +GSGHL + + + G +L + I I+G T T +S
Sbjct: 2374 TGAQIGALNTLAVNIGSGHLKVADTASGALLGGVSLASLPGKHVDQIQITGGTLTTDVST 2433
Query: 296 PTMSPRPESVSQ 261
T + ++SQ
Sbjct: 2434 LTTTLSAVTISQ 2445
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,866,564
Number of Sequences: 1393205
Number of extensions: 8862821
Number of successful extensions: 16216
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 15741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16205
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
