KMC003530A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC003530A_C01 KMC003530A_c01
acatatttttttttGTAAGTAAAATTGTATTGATGAGATACTAGGGGTACCTCAAACCCA
TGGTAATTACAAGGAAGAAGAACAAGAAAAAAGGAGAAGGTCCAAAGGACACAATACAGT
GACTAGAGCAACAGAGTGAACAACAAAAACAAATCTAAAGATCACTAATCTGAATCTACT
AGCCTATATATATCTAGCTATGCTACTACATAATTCAGCTAAATTGAGGATCAAGTTCTC
AGACTTTAGAACAAAACAGCTGCTACAAGATCAATACCCTGCCAATCCACTGACGTAAAA
ACTCAGCAAATACATCCAGTTGCACGCATAGAAGAGCCAGAATTGCAGAAACAGCCCTTC
AGCAATTCAACCACTTCAGAACCCAATACTATATAGCTGAAACGGTATATACTATCAGTA
ACTTTCTAAATATAAATTATGTACATAAAGCAGAGGATACATCTACATAAACTTTTTTGA
TTGAAGGAAG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003530A_C01 KMC003530A_c01
(490 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM09332.2| similar to Homo sapiens (Human). Dentin sialophos... 32 2.9
ref|NP_003476.1| G protein-coupled receptor 68; Ovarian cancer G... 31 8.5
>gb|AAM09332.2| similar to Homo sapiens (Human). Dentin sialophosphoprotein
precursor [Contains: Dentin phosphoprotein (Dentin
phosphophoryn) (DPP); Dentin sialoprotein (DSP)]
[Dictyostelium discoideum]
Length = 1140
Score = 32.3 bits (72), Expect = 2.9
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Frame = +1
Query: 94 EKVQRTQYSD*SNRVNNKNKSKDH*SESTSLYISSYATT*FS*IEDQVLRL*NKTAATRS 273
E+V Q NN N + +H + ++ SSY + S IE+ L +KT+++ S
Sbjct: 29 EEVIHEQQQQQQQHNNNNNNNNNHQRQPSTTSTSSYIDSASSSIEETSGYL-SKTSSSSS 87
Query: 274 IPC-------QSTDVKTQQIHPVARIEEPELQKQPFSNSTTSEPNT 390
+P Q+ + Q + E Q+Q S S TS PNT
Sbjct: 88 LPSSPLHNQNQNQNGNIQLNSSSGSLNNNEQQQQQQSISQTSSPNT 133
>ref|NP_003476.1| G protein-coupled receptor 68; Ovarian cancer G protein-coupled
receptor, 1 [Homo sapiens]
gi|3024266|sp|Q15743|GP68_HUMAN Probable G
protein-coupled receptor GPR68 (Ovarian cancer G
protein-coupled receptor 1) (OGR-1)
gi|1457939|gb|AAC50596.1| G protein coupled receptor
OGR1
Length = 365
Score = 30.8 bits (68), Expect = 8.5
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = -2
Query: 336 LFYACN---WMYLLSFYVSGLAGY*SCSSCFVLKSENLILNLAELCS-SIARYI-*ASRF 172
LFY C+ W+ + + + G SC C +L EN+ +++ LC S+ RY+ A F
Sbjct: 68 LFYICSLPFWLQYVLQHDNWSHGDLSCQVCGILLYENIYISVGFLCCISVDRYLAVAHPF 127
Query: 171 RLVIFRFVFVVHSVALV 121
R FR + V++V
Sbjct: 128 RFHQFRTLKAAVGVSVV 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 365,154,989
Number of Sequences: 1393205
Number of extensions: 6834720
Number of successful extensions: 18995
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18936
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
GNf097f02 |
BP074570 |
1 |
490 |
2 |
MWM143f05_f |
AV766968 |
15 |
285 |
3 |
GNf048e06 |
BP070920 |
15 |
406 |
4 |
GNf057c10 |
BP071604 |
19 |
424 |
|
Lotus japonicus
Kazusa DNA Research Institute