KMC003530A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC003530A_C01 KMC003530A_c01
acatatttttttttGTAAGTAAAATTGTATTGATGAGATACTAGGGGTACCTCAAACCCA
TGGTAATTACAAGGAAGAAGAACAAGAAAAAAGGAGAAGGTCCAAAGGACACAATACAGT
GACTAGAGCAACAGAGTGAACAACAAAAACAAATCTAAAGATCACTAATCTGAATCTACT
AGCCTATATATATCTAGCTATGCTACTACATAATTCAGCTAAATTGAGGATCAAGTTCTC
AGACTTTAGAACAAAACAGCTGCTACAAGATCAATACCCTGCCAATCCACTGACGTAAAA
ACTCAGCAAATACATCCAGTTGCACGCATAGAAGAGCCAGAATTGCAGAAACAGCCCTTC
AGCAATTCAACCACTTCAGAACCCAATACTATATAGCTGAAACGGTATATACTATCAGTA
ACTTTCTAAATATAAATTATGTACATAAAGCAGAGGATACATCTACATAAACTTTTTTGA
TTGAAGGAAG


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC003530A_C01 KMC003530A_c01
         (490 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM09332.2| similar to Homo sapiens (Human). Dentin sialophos...    32  2.9
ref|NP_003476.1| G protein-coupled receptor 68; Ovarian cancer G...    31  8.5

>gb|AAM09332.2| similar to Homo sapiens (Human). Dentin sialophosphoprotein
           precursor [Contains: Dentin phosphoprotein (Dentin
           phosphophoryn) (DPP); Dentin sialoprotein (DSP)]
           [Dictyostelium discoideum]
          Length = 1140

 Score = 32.3 bits (72), Expect = 2.9
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
 Frame = +1

Query: 94  EKVQRTQYSD*SNRVNNKNKSKDH*SESTSLYISSYATT*FS*IEDQVLRL*NKTAATRS 273
           E+V   Q        NN N + +H  + ++   SSY  +  S IE+    L +KT+++ S
Sbjct: 29  EEVIHEQQQQQQQHNNNNNNNNNHQRQPSTTSTSSYIDSASSSIEETSGYL-SKTSSSSS 87

Query: 274 IPC-------QSTDVKTQQIHPVARIEEPELQKQPFSNSTTSEPNT 390
           +P        Q+ +   Q       +   E Q+Q  S S TS PNT
Sbjct: 88  LPSSPLHNQNQNQNGNIQLNSSSGSLNNNEQQQQQQSISQTSSPNT 133

>ref|NP_003476.1| G protein-coupled receptor 68; Ovarian cancer G protein-coupled
           receptor, 1 [Homo sapiens]
           gi|3024266|sp|Q15743|GP68_HUMAN Probable G
           protein-coupled receptor GPR68 (Ovarian cancer G
           protein-coupled receptor 1) (OGR-1)
           gi|1457939|gb|AAC50596.1| G protein coupled receptor
           OGR1
          Length = 365

 Score = 30.8 bits (68), Expect = 8.5
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
 Frame = -2

Query: 336 LFYACN---WMYLLSFYVSGLAGY*SCSSCFVLKSENLILNLAELCS-SIARYI-*ASRF 172
           LFY C+   W+  +  + +   G  SC  C +L  EN+ +++  LC  S+ RY+  A  F
Sbjct: 68  LFYICSLPFWLQYVLQHDNWSHGDLSCQVCGILLYENIYISVGFLCCISVDRYLAVAHPF 127

Query: 171 RLVIFRFVFVVHSVALV 121
           R   FR +     V++V
Sbjct: 128 RFHQFRTLKAAVGVSVV 144

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 365,154,989
Number of Sequences: 1393205
Number of extensions: 6834720
Number of successful extensions: 18995
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18936
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 GNf097f02 BP074570 1 490
2 MWM143f05_f AV766968 15 285
3 GNf048e06 BP070920 15 406
4 GNf057c10 BP071604 19 424




Lotus japonicus
Kazusa DNA Research Institute