Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003527A_C01 KMC003527A_c01
(1038 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565634.1| expressed protein; protein id: At2g27080.1, sup... 275 8e-73
ref|NP_197612.1| putative protein; protein id: At5g21130.1 [Arab... 214 2e-54
dbj|BAB85244.1| P0425G02.19 [Oryza sativa (japonica cultivar-gro... 197 2e-49
ref|NP_175856.1| hypothetical protein; protein id: At1g54540.1 [... 132 1e-29
ref|NP_198513.1| putative protein; protein id: At5g36970.1 [Arab... 131 2e-29
>ref|NP_565634.1| expressed protein; protein id: At2g27080.1, supported by cDNA:
gi_13877664, supported by cDNA: gi_15450380, supported
by cDNA: gi_16974488 [Arabidopsis thaliana]
gi|25407856|pir||E84668 hypothetical protein At2g27080
[imported] - Arabidopsis thaliana
gi|3885338|gb|AAC77866.1| expressed protein [Arabidopsis
thaliana] gi|13877665|gb|AAK43910.1|AF370591_1 Unknown
protein [Arabidopsis thaliana]
gi|15450381|gb|AAK96484.1| At2g27080/T20P8.13
[Arabidopsis thaliana] gi|16974489|gb|AAL31248.1|
At2g27080/T20P8.13 [Arabidopsis thaliana]
Length = 260
Score = 275 bits (703), Expect = 8e-73
Identities = 134/265 (50%), Positives = 177/265 (66%), Gaps = 3/265 (1%)
Frame = -1
Query: 987 MADRVHPHTSPPASAESQPAPPPSE---KPASPTGTYVIQIPKDQVYRVPPPENARRYAN 817
MA+RV+P SPP S + E KPA P TYVIQ+PKDQ+YR+PPPENA R+
Sbjct: 1 MAERVYPADSPPQSGQFSGNFSSGEFPKKPAPPPSTYVIQVPKDQIYRIPPPENAHRFEQ 60
Query: 816 YNRRKTRRCGFCCCLCWLIGLLFIFLILLGIAAGVFYLVFRPKAPNYSIQTVSVKGMNLT 637
+R+KT R CC C + +FI ++L GI+ V YL++RP+AP YSI+ SV G+NL
Sbjct: 61 LSRKKTNRSNCRCCFCSFLAAVFILIVLAGISFAVLYLIYRPEAPKYSIEGFSVSGINLN 120
Query: 636 SPSPSSAAAISPEFDVAVRANNGNDKIGIYYLKGSSVEMFYRDSRLCGGALPAFYQASNN 457
S SP ISP F+V VR+ NGN KIG+YY K SSV+++Y D + G +P FYQ + N
Sbjct: 121 STSP-----ISPSFNVTVRSRNGNGKIGVYYEKESSVDVYYNDVDISNGVMPVFYQPAKN 175
Query: 456 VTVFKAVLKGDGVELAGSDRTALVNAVAKRSVPLTMKLRAPVKIKVGSVKTWKITVKVDC 277
VTV K VL G ++L R + N V+K++VP +K++APVKIK GSVKTW + V VDC
Sbjct: 176 VTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPFKLKIKAPVKIKFGSVKTWTMIVNVDC 235
Query: 276 DVAVDQLTAKSKIVHKDCSYGLDFW 202
DV VD+LTA S+IV + CS+ +D W
Sbjct: 236 DVTVDKLTAPSRIVSRKCSHDVDLW 260
>ref|NP_197612.1| putative protein; protein id: At5g21130.1 [Arabidopsis thaliana]
gi|29294053|gb|AAO73890.1| hypothetical protein
[Arabidopsis thaliana]
Length = 281
Score = 214 bits (544), Expect = 2e-54
Identities = 111/248 (44%), Positives = 153/248 (60%), Gaps = 2/248 (0%)
Frame = -1
Query: 948 SAESQPAPPPSEKPASPTGTYVIQIPKDQVYRVPPPENARRYANYNRRKTRRCGFCC--C 775
S +S+ PPP GTYVI++PKDQ+YRVPPPENA RY +RRKT + CC C
Sbjct: 46 SQKSRIGPPP--------GTYVIKLPKDQIYRVPPPENAHRYEYLSRRKTNKS--CCRRC 95
Query: 774 LCWLIGLLFIFLILLGIAAGVFYLVFRPKAPNYSIQTVSVKGMNLTSPSPSSAAAISPEF 595
LC+ + L I ++L IA G FYLV++P P +S+ VSV G+NLTS SP SP
Sbjct: 96 LCYSLSALLIIIVLAAIAFGFFYLVYQPHKPQFSVSGVSVTGINLTSSSP-----FSPVI 150
Query: 594 DVAVRANNGNDKIGIYYLKGSSVEMFYRDSRLCGGALPAFYQASNNVTVFKAVLKGDGVE 415
+ +R+ N K+G+ Y KG+ ++F+ ++L G AF Q + NVTV VLKG V+
Sbjct: 151 RIKLRSQNVKGKLGLIYEKGNEADVFFNGTKLGNGEFTAFKQPAGNVTVIVTVLKGSSVK 210
Query: 414 LAGSDRTALVNAVAKRSVPLTMKLRAPVKIKVGSVKTWKITVKVDCDVAVDQLTAKSKIV 235
L S R L + K VP ++++APVK KVGSV TW +T+ VDC + VD+LTA + +
Sbjct: 211 LKSSSRKELTESQKKGKVPFGLRIKAPVKFKVGSVTTWTMTITVDCKITVDKLTASATVK 270
Query: 234 HKDCSYGL 211
++C GL
Sbjct: 271 TENCETGL 278
>dbj|BAB85244.1| P0425G02.19 [Oryza sativa (japonica cultivar-group)]
gi|20161461|dbj|BAB90385.1| P0432B10.3 [Oryza sativa
(japonica cultivar-group)]
Length = 312
Score = 197 bits (501), Expect = 2e-49
Identities = 112/271 (41%), Positives = 158/271 (57%), Gaps = 22/271 (8%)
Frame = -1
Query: 969 PHTSPPASAESQP-------APPPSEK-------PASPTGTYVIQIPKDQVYRVPPPENA 832
P +SPP S + APPP++ PA GTYV+Q+PKD+V+RVPPPENA
Sbjct: 31 PSSSPPYSFHFEKPLPPTAAAPPPADARRYQQLLPAPQPGTYVVQMPKDKVFRVPPPENA 90
Query: 831 RRYANYNRRKTRRCGFCCC-LC-WLIGLLFIFLILLGIAAGVFYLVFRPKAPNYSIQTVS 658
R + +Y RR RR C +C WL+ L + L +A V YLVF+P+ P+Y++ +++
Sbjct: 91 RLFQHYTRRARRRARCSCARVCSWLLLALVLLAAALAASAAVVYLVFKPRQPDYTLLSLA 150
Query: 657 VKGM-----NLTSPSPSSAAAISPEFDVAVRANNGNDKIGIYYLKGSS-VEMFYRDSRLC 496
V G+ N +S + + + SPEFD VRA+N N KIG++Y G S V + Y RL
Sbjct: 151 VSGLGGILGNASSTAAPAPVSFSPEFDATVRADNPNGKIGVHYEGGGSHVAVSYGGVRLA 210
Query: 495 GGALPAFYQASNNVTVFKAVLKGDGVELAGSDRTALVNAVAKRSVPLTMKLRAPVKIKVG 316
GA PAFYQ NVTV A KG G+ + + A RSVP + ++ PV+++VG
Sbjct: 211 DGAWPAFYQGPRNVTVLVATAKGLGIRFSERLLGDIAAAGRLRSVPFDVDVKVPVRLQVG 270
Query: 315 SVKTWKITVKVDCDVAVDQLTAKSKIVHKDC 223
V+TW + V+V C V VD+L A +K+V K C
Sbjct: 271 GVRTWAVPVRVRCAVVVDRLAADAKVVSKSC 301
>ref|NP_175856.1| hypothetical protein; protein id: At1g54540.1 [Arabidopsis
thaliana] gi|25405746|pir||D96587 hypothetical protein
F20D21.35 [imported] - Arabidopsis thaliana
gi|4585996|gb|AAD25632.1|AC005287_34 Hypothetical
protein [Arabidopsis thaliana]
Length = 239
Score = 132 bits (331), Expect = 1e-29
Identities = 85/257 (33%), Positives = 123/257 (47%), Gaps = 3/257 (1%)
Frame = -1
Query: 978 RVHPHTSPPASAESQPAPPPSEKPASPTGTYVIQIPKDQVYRVPPPENARRYANYNRRKT 799
++HP A+ P P + P +Q P +PPP + N
Sbjct: 6 KIHPVLQMEANKTKTTTPAPGKTVLLP-----VQRP------IPPPVIPSKNRN------ 48
Query: 798 RRCGFCCCL-CWLIGLLFIFLILLGIAAGVFYLVFRPKAPNYSIQTVSVKGMNLTSPSPS 622
CC + CW++ LL I LI L IA V Y VF PK P+Y + ++ V + +
Sbjct: 49 ----MCCKIFCWVLSLLVIALIALAIAVAVVYFVFHPKLPSYEVNSLRVTNLGINLD--- 101
Query: 621 SAAAISPEFDVAVRANNGNDKIGIYYLKGSSVEMFYRDSRLCGGALPAFYQASNNVTVFK 442
++S EF V + A N N+KIGIYY KG + ++Y ++LC G +P FYQ NVT
Sbjct: 102 --LSLSAEFKVEITARNPNEKIGIYYEKGGHIGVWYDKTKLCEGPIPRFYQGHRNVTKLN 159
Query: 441 AVLKGDGVELAGSDRTALVNAVAKRSVPLTMKLRAPVKIKVGSVKTWKITVKVDCDVAVD 262
L G + + AL VPL +K+ APV IK+G++K KI + C + VD
Sbjct: 160 VALTG-RAQYGNTVLAALQQQQQTGRVPLDLKVNAPVAIKLGNLKMKKIRILGSCKLVVD 218
Query: 261 QLTAKSKIVHK--DCSY 217
L+ + I K DCS+
Sbjct: 219 SLSTNNNINIKASDCSF 235
>ref|NP_198513.1| putative protein; protein id: At5g36970.1 [Arabidopsis thaliana]
Length = 248
Score = 131 bits (329), Expect = 2e-29
Identities = 78/260 (30%), Positives = 124/260 (47%), Gaps = 6/260 (2%)
Frame = -1
Query: 978 RVHPHTSPPASAESQPAPPPSEKPASPTGTYVIQ----IPKDQVYRVPPPENARRYANYN 811
++HP + P A PP P P G+ + Q + PP
Sbjct: 6 KIHPVSDPEA-------PPHPTAPLVPRGSSRSEHGDPTKTQQAAPLDPPRE-------- 50
Query: 810 RRKTRRCGFCCCLCWLIGLLFIFLILLGIAAGVFYLVFRPKAPNYSIQTVSVKGMNLTSP 631
+K R +C C+C+ + +LF+ ++++G G+ YLVFRPK P+Y+I + + L
Sbjct: 51 -KKGSRSCWCRCVCYTLLVLFLLIVIVGAIVGILYLVFRPKFPDYNIDRLQLTRFQLNQD 109
Query: 630 SPSSAAAISPEFDVAVRANNGNDKIGIYYLKGSSVEMFYRDSRLCGGALPAFYQASNNVT 451
++S F+V + A N N+KIGIYY GS + + Y +R+ G+LP FYQ N T
Sbjct: 110 -----LSLSTAFNVTITAKNPNEKIGIYYEDGSKISVLYMQTRISNGSLPKFYQGHENTT 164
Query: 450 VFKAVLKGDGVELAGSDRTALVNAVAKRSVPLTMKLRAPVKIKVGSVKTWKITVKVDCDV 271
+ + G T S+PL +++ PV+IK+G +K K+ V C V
Sbjct: 165 IILVEMTGFTQNATSLMTTLQEQQRLTGSIPLRIRVTQPVRIKLGKLKLMKVRFLVRCGV 224
Query: 270 AVDQLTAKS--KIVHKDCSY 217
+VD L A S ++ +C Y
Sbjct: 225 SVDSLAANSVIRVRSSNCKY 244
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 936,371,615
Number of Sequences: 1393205
Number of extensions: 25287484
Number of successful extensions: 347829
Number of sequences better than 10.0: 4293
Number of HSP's better than 10.0 without gapping: 141461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271987
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 60980933767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
