Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003526A_C01 KMC003526A_c01
(359 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_618230.1| predicted protein [Methanosarcina acetivorans s... 32 2.0
gb|EAA21069.1| hypothetical protein [Plasmodium yoelii yoelii] 31 4.5
ref|NP_690502.1| von Willebrand factor [Heliothis zea virus 1] g... 31 4.5
sp|P30996|BXF_CLOBO Botulinum neurotoxin type F precursor (BoNT/... 30 5.9
sp|Q60393|BXG_CLOBO Botulinum neurotoxin type G precursor (BoNT/... 30 7.7
>ref|NP_618230.1| predicted protein [Methanosarcina acetivorans str. C2A]
gi|19917380|gb|AAM06710.1| predicted protein
[Methanosarcina acetivorans str. C2A]
Length = 284
Score = 32.0 bits (71), Expect = 2.0
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = -2
Query: 214 SQLVVVWIVFKLVCCFIVSFYVGSFMW*LPRPEEV 110
++L+ + + +++C FI+ F + SF+W LP EE+
Sbjct: 182 NKLIAIDLAKRMICGFIIGFTLVSFIWYLPYGEEL 216
>gb|EAA21069.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1730
Score = 30.8 bits (68), Expect = 4.5
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +3
Query: 60 SKTQSENHKSSWLSQKITSSGLGNYHIKLPT*KLTIKQQTNLNTIHTTTN----WEFKLT 227
+KT + +K +LSQ IT++ Y+I L T L K++ N++ TN E K +
Sbjct: 1452 NKTNNYLNKEYFLSQVITTNLFEIYYINLMTIILQFKKENNISIDTQKTNNNSYDENKNS 1511
Query: 228 NIILLNYFFLL 260
NI L+++ +L
Sbjct: 1512 NIDELSFYIIL 1522
>ref|NP_690502.1| von Willebrand factor [Heliothis zea virus 1]
gi|22671550|gb|AAN04377.1|AF451898_82 von Willebrand
factor [Heliothis zea virus 1]
Length = 468
Score = 30.8 bits (68), Expect = 4.5
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +3
Query: 78 NHKSSWLSQKITSSGLGNYHIKLPT*KLTIKQQTNLNTIHTTTN--WEFKLTNIILLNYF 251
N K+S + TS G N + + + TN+NT TTTN + F T +L N
Sbjct: 76 NFKNSTTTATATSGGNINANANINNTNINTNSSTNINTNPTTTNNPYSFSSTTNLLCNEK 135
Query: 252 FL 257
F+
Sbjct: 136 FI 137
>sp|P30996|BXF_CLOBO Botulinum neurotoxin type F precursor (BoNT/F) (Bontoxilysin F)
gi|2118643|pir||I40813 neurotoxin type F - Clostridium
botulinum gi|144867|gb|AAA23263.1| neurotoxin type F
gi|383771|prf||1904210A neurotoxin F
Length = 1274
Score = 30.4 bits (67), Expect = 5.9
Identities = 16/49 (32%), Positives = 26/49 (52%)
Frame = +3
Query: 78 NHKSSWLSQKITSSGLGNYHIKLPT*KLTIKQQTNLNTIHTTTNWEFKL 224
N+ + W+ IT++ LGN I + + K +NL IH + N FK+
Sbjct: 1005 NYINKWIFVTITNNRLGNSRIYINGNLIVEKSISNLGDIHVSDNILFKI 1053
>sp|Q60393|BXG_CLOBO Botulinum neurotoxin type G precursor (BoNT/G) (Bontoxilysin G)
gi|441276|emb|CAA52275.1| BoNT/G [Clostridium botulinum]
Length = 1297
Score = 30.0 bits (66), Expect = 7.7
Identities = 19/66 (28%), Positives = 34/66 (50%)
Frame = +3
Query: 33 TKGIQSETHSKTQSENHKSSWLSQKITSSGLGNYHIKLPT*KLTIKQQTNLNTIHTTTNW 212
+K I E K ++ + W S IT+ LGN +I + ++ NL+ I+++ +
Sbjct: 989 SKSIFFEYSIKDNISDYINKWFSITITNDRLGNANIYINGSLKKSEKILNLDRINSSNDI 1048
Query: 213 EFKLTN 230
+FKL N
Sbjct: 1049 DFKLIN 1054
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 294,871,179
Number of Sequences: 1393205
Number of extensions: 5570838
Number of successful extensions: 12413
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12396
length of database: 448,689,247
effective HSP length: 95
effective length of database: 316,334,772
effective search space used: 7592034528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
