Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003523A_C01 KMC003523A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB11623.1| N-carbamyl-L-amino acid amidohydrolase-like prot... 157 7e-38
ref|NP_199173.2| N-carbamyl-L-amino acid amidohydrolase-like pro... 157 7e-38
pir||T05921 N-carbamyl-L-amino acid amidohydrolase homolog - bar... 154 4e-37
ref|NP_344039.1| N-carbamoyl-L-amino acid amidohydrolase (amaB) ... 71 8e-12
ref|NP_438746.1| N-carbamyl-L-amino acid amidohydrolase [Haemoph... 70 1e-11
>dbj|BAB11623.1| N-carbamyl-L-amino acid amidohydrolase-like protein [Arabidopsis
thaliana]
Length = 441
Score = 157 bits (397), Expect = 7e-38
Identities = 78/102 (76%), Positives = 88/102 (85%)
Frame = -2
Query: 509 ITETRGVKLSEFHIVNQDPPALSDEAVINAMETATTVLNLTSKLMISRAYHDSLFMARLS 330
I + R VKLSEF IVNQDPPALSD+ VI M A T LNL+ K+MISRAYHDSLFMAR+S
Sbjct: 339 IAKKRKVKLSEFKIVNQDPPALSDKLVIKKMAEAATELNLSHKMMISRAYHDSLFMARIS 398
Query: 329 PMGMIFIPCYKGYSHKPEEFAKIEDMSNGVRVLALTLAKLSL 204
PMGMIFIPCYKGYSHKPEE++ EDM+NGV+VL+LTLAKLSL
Sbjct: 399 PMGMIFIPCYKGYSHKPEEYSSPEDMANGVKVLSLTLAKLSL 440
>ref|NP_199173.2| N-carbamyl-L-amino acid amidohydrolase-like protein; protein id:
At5g43600.1, supported by cDNA: gi_18377778, supported
by cDNA: gi_20259220 [Arabidopsis thaliana]
gi|18377779|gb|AAL67039.1| putative N-carbamyl-L-amino
acid amidohydrolase [Arabidopsis thaliana]
gi|20259221|gb|AAM14326.1| putative N-carbamyl-L-amino
acid amidohydrolase [Arabidopsis thaliana]
Length = 476
Score = 157 bits (397), Expect = 7e-38
Identities = 78/102 (76%), Positives = 88/102 (85%)
Frame = -2
Query: 509 ITETRGVKLSEFHIVNQDPPALSDEAVINAMETATTVLNLTSKLMISRAYHDSLFMARLS 330
I + R VKLSEF IVNQDPPALSD+ VI M A T LNL+ K+MISRAYHDSLFMAR+S
Sbjct: 374 IAKKRKVKLSEFKIVNQDPPALSDKLVIKKMAEAATELNLSHKMMISRAYHDSLFMARIS 433
Query: 329 PMGMIFIPCYKGYSHKPEEFAKIEDMSNGVRVLALTLAKLSL 204
PMGMIFIPCYKGYSHKPEE++ EDM+NGV+VL+LTLAKLSL
Sbjct: 434 PMGMIFIPCYKGYSHKPEEYSSPEDMANGVKVLSLTLAKLSL 475
>pir||T05921 N-carbamyl-L-amino acid amidohydrolase homolog - barley (fragment)
gi|2695925|emb|CAA10981.1| hypothetical protein [Hordeum
vulgare subsp. vulgare]
Length = 108
Score = 154 bits (390), Expect = 4e-37
Identities = 76/103 (73%), Positives = 89/103 (85%)
Frame = -2
Query: 509 ITETRGVKLSEFHIVNQDPPALSDEAVINAMETATTVLNLTSKLMISRAYHDSLFMARLS 330
I+++R V L EF I+NQDPPALSD++VINAME L L KLMISRAYHDSLFMAR+S
Sbjct: 6 ISKSRRVDLLEFKIINQDPPALSDKSVINAMEFGAKQLGLEYKLMISRAYHDSLFMARIS 65
Query: 329 PMGMIFIPCYKGYSHKPEEFAKIEDMSNGVRVLALTLAKLSLQ 201
PMGMIFIPCYKGYSHKPEE+A EDM+NGV++LALT+AKLSL+
Sbjct: 66 PMGMIFIPCYKGYSHKPEEYASQEDMANGVQMLALTMAKLSLE 108
>ref|NP_344039.1| N-carbamoyl-L-amino acid amidohydrolase (amaB) [Sulfolobus
solfataricus] gi|25290161|pir||F90446
n-carbamoyl-L-amino acid amidohydrolase (amaB)
[imported] - Sulfolobus solfataricus
gi|13816041|gb|AAK42829.1| N-carbamoyl-L-amino acid
amidohydrolase (amaB) [Sulfolobus solfataricus]
Length = 401
Score = 70.9 bits (172), Expect = 8e-12
Identities = 38/93 (40%), Positives = 58/93 (61%)
Frame = -2
Query: 509 ITETRGVKLSEFHIVNQDPPALSDEAVINAMETATTVLNLTSKLMISRAYHDSLFMARLS 330
I + +++ H+ +P + SDE VI+ +E A L++ K M S A HD+ +M ++S
Sbjct: 301 IADDEKLEVEYRHLWTANPVSFSDE-VISVIERACKELSMRYKFMYSWAGHDAQYMTKIS 359
Query: 329 PMGMIFIPCYKGYSHKPEEFAKIEDMSNGVRVL 231
+GMIFIP + G SH EE++ EDM NG+RVL
Sbjct: 360 KVGMIFIPSHLGISHAKEEYSSDEDMLNGLRVL 392
>ref|NP_438746.1| N-carbamyl-L-amino acid amidohydrolase [Haemophilus influenzae Rd]
gi|2492828|sp|Q57051|Y588_HAEIN Protein HI0588
gi|1075052|pir||D64079 probable N-carbamyl-L-amino acid
amidohydrolase (EC 3.5.1.-) HI0588 [similarity] -
Haemophilus influenzae (strain Rd KW20)
gi|1573578|gb|AAC22245.1| N-carbamyl-L-amino acid
amidohydrolase [Haemophilus influenzae Rd]
Length = 411
Score = 70.1 bits (170), Expect = 1e-11
Identities = 36/94 (38%), Positives = 57/94 (60%)
Frame = -2
Query: 512 KITETRGVKLSEFHIVNQDPPALSDEAVINAMETATTVLNLTSKLMISRAYHDSLFMARL 333
K++E RG+ L E ++++D P + E ++N + L + ++M S A HD++ MA L
Sbjct: 308 KVSEKRGL-LIELQLISKDNPIILPENMVNQIAETAHSLGYSYEIMPSGAGHDAMHMATL 366
Query: 332 SPMGMIFIPCYKGYSHKPEEFAKIEDMSNGVRVL 231
P GMIFIP + G SH P EF +D+ G++VL
Sbjct: 367 CPTGMIFIPSHLGISHNPLEFTDWKDIEAGIKVL 400
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,319,880
Number of Sequences: 1393205
Number of extensions: 7905795
Number of successful extensions: 15072
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 14764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15071
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
