Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003521A_C01 KMC003521A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175945.1| Rubisco subunit binding-protein beta subunit; p... 214 8e-55
pir||JT0901 chaperonin 60 beta precursor - Arabidopsis thaliana 211 7e-54
sp|P08927|RUBB_PEA RuBisCO subunit binding-protein beta subunit,... 210 1e-53
ref|NP_187956.1| chaperonin 60 beta, putative; protein id: At3g1... 209 3e-53
pir||T07733 probable chaperonin 60 beta chain precursor, chlorop... 207 1e-52
>ref|NP_175945.1| Rubisco subunit binding-protein beta subunit; protein id:
At1g55490.1, supported by cDNA: gi_14423415, supported
by cDNA: gi_20148344 [Arabidopsis thaliana]
gi|27735252|sp|P21240|RUBB_ARATH RuBisCO subunit
binding-protein beta subunit, chloroplast precursor (60
kDa chaperonin beta subunit) (CPN-60 beta)
gi|25300374|pir||B96597 Rubisco subunit binding-protein
beta subunit [imported] - Arabidopsis thaliana
gi|4204266|gb|AAD10647.1| Rubisco subunit
binding-protein beta subunit [Arabidopsis thaliana]
gi|14423416|gb|AAK62390.1|AF386945_1 Rubisco subunit
binding-protein beta subunit [Arabidopsis thaliana]
gi|20148345|gb|AAM10063.1| Rubisco subunit
binding-protein beta subunit [Arabidopsis thaliana]
Length = 600
Score = 214 bits (545), Expect = 8e-55
Identities = 105/112 (93%), Positives = 109/112 (96%)
Frame = -2
Query: 642 DNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNFRYGYNAATGKYEDLMA 463
DNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLS+DN ++GYNAATGKYEDLMA
Sbjct: 488 DNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMA 547
Query: 462 AGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPVVAGNPMDNSGYG 307
AGIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPEPV GNPMDNSGYG
Sbjct: 548 AGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVPVGNPMDNSGYG 599
>pir||JT0901 chaperonin 60 beta precursor - Arabidopsis thaliana
Length = 600
Score = 211 bits (537), Expect = 7e-54
Identities = 104/112 (92%), Positives = 108/112 (95%)
Frame = -2
Query: 642 DNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNFRYGYNAATGKYEDLMA 463
DNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLS+DN ++GYNAATGKYEDLMA
Sbjct: 488 DNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSNDNVKFGYNAATGKYEDLMA 547
Query: 462 AGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPVVAGNPMDNSGYG 307
AGIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPEPV GNPMDNSG G
Sbjct: 548 AGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEPVPVGNPMDNSGLG 599
>sp|P08927|RUBB_PEA RuBisCO subunit binding-protein beta subunit, chloroplast precursor
(60 kDa chaperonin beta subunit) (CPN-60 beta)
gi|7443853|pir||T06412 probable chaperonin 60 beta chain
- garden pea chloroplast gi|806808|gb|AAA66365.1|
chaperonin precursor [Pisum sativum]
Length = 595
Score = 210 bits (534), Expect = 1e-53
Identities = 105/111 (94%), Positives = 106/111 (94%)
Frame = -2
Query: 639 NDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNFRYGYNAATGKYEDLMAA 460
NDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDN +YGYNAATGKYEDLMAA
Sbjct: 483 NDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNPKYGYNAATGKYEDLMAA 542
Query: 459 GIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPVVAGNPMDNSGYG 307
GIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE GNPMDNSGYG
Sbjct: 543 GIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPESAPVGNPMDNSGYG 593
>ref|NP_187956.1| chaperonin 60 beta, putative; protein id: At3g13470.1 [Arabidopsis
thaliana] gi|9280299|dbj|BAB01754.1| GloEL protein;
chaperonin, 60 kDa [Arabidopsis thaliana]
Length = 596
Score = 209 bits (532), Expect = 3e-53
Identities = 102/112 (91%), Positives = 109/112 (97%)
Frame = -2
Query: 642 DNDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNFRYGYNAATGKYEDLMA 463
+NDEEKVGA+IVKRALSYPLKLIAKNAGVNGSVVSEKVL++DN ++GYNAATGKYEDLMA
Sbjct: 484 ENDEEKVGAEIVKRALSYPLKLIAKNAGVNGSVVSEKVLANDNVKFGYNAATGKYEDLMA 543
Query: 462 AGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPVVAGNPMDNSGYG 307
AGIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEI EPEPV AGNPMDNSGYG
Sbjct: 544 AGIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIPEPEPVPAGNPMDNSGYG 595
>pir||T07733 probable chaperonin 60 beta chain precursor, chloroplast (clone
potbchap1) - potato gi|1762130|gb|AAB39827.1|
chaperonin-60 beta subunit
Length = 599
Score = 207 bits (527), Expect = 1e-52
Identities = 103/111 (92%), Positives = 107/111 (95%)
Frame = -2
Query: 639 NDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDNFRYGYNAATGKYEDLMAA 460
NDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSD+ ++GYNAATG YEDLMAA
Sbjct: 488 NDEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLSSDDPKFGYNAATGNYEDLMAA 547
Query: 459 GIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPVVAGNPMDNSGYG 307
GIIDPTKVVRCCLEHA+SVAKTFLMSDCVVVEIKEPE VAGNPMDNSGYG
Sbjct: 548 GIIDPTKVVRCCLEHAASVAKTFLMSDCVVVEIKEPEAAVAGNPMDNSGYG 598
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,523,172
Number of Sequences: 1393205
Number of extensions: 11104161
Number of successful extensions: 28770
Number of sequences better than 10.0: 677
Number of HSP's better than 10.0 without gapping: 27545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28303
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
