Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003520A_C01 KMC003520A_c01
(381 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD31716.1| putative ripening related protein [Cicer arietinum] 71 4e-12
gb|AAD50376.1|AF127110_1 ripening related protein [Glycine max] 67 5e-11
gb|AAK14060.1|AF239177_1 major latex-like protein [Prunus persica] 42 0.002
emb|CAB53544.1| latex-like protein [Prunus persica] 40 0.006
ref|NP_177243.1| major latex protein (MLP)-related; protein id: ... 39 0.012
>emb|CAD31716.1| putative ripening related protein [Cicer arietinum]
Length = 152
Score = 70.9 bits (172), Expect = 4e-12
Identities = 30/52 (57%), Positives = 39/52 (74%)
Frame = -3
Query: 379 LTLQVIEN*DGHDTVKWTVEYEMHHEEKEPPHGWMEYVHKCTRDIDANLLKA 224
L LQV + DG VKWT+EYE +E+ PP+GWM+Y+ KCTRD+D NL+KA
Sbjct: 101 LILQVFDKSDGSGAVKWTIEYEKINEDIYPPNGWMDYLSKCTRDLDGNLVKA 152
>gb|AAD50376.1|AF127110_1 ripening related protein [Glycine max]
Length = 152
Score = 67.0 bits (162), Expect = 5e-11
Identities = 29/52 (55%), Positives = 39/52 (74%)
Frame = -3
Query: 379 LTLQVIEN*DGHDTVKWTVEYEMHHEEKEPPHGWMEYVHKCTRDIDANLLKA 224
L Q I+ + +KWT+EYE EE +PP+G++EYVHKCT+DIDA+LLKA
Sbjct: 101 LIFQAIDKENDSAIIKWTIEYERIGEEVDPPYGYIEYVHKCTKDIDAHLLKA 152
>gb|AAK14060.1|AF239177_1 major latex-like protein [Prunus persica]
Length = 156
Score = 41.6 bits (96), Expect = 0.002
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = -3
Query: 337 VKWTVEYEMHHEEKEPPHGWMEYVHKCTRDIDANLLKA 224
V WT+EYE HH + E PH +++ ++D+DA+L A
Sbjct: 117 VHWTMEYEKHHGDIEDPHTLLQFAVDVSKDVDAHLTSA 154
>emb|CAB53544.1| latex-like protein [Prunus persica]
Length = 47
Score = 40.4 bits (93), Expect = 0.006
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -3
Query: 337 VKWTVEYEMHHEEKEPPHGWMEYVHKCTRDIDANLLKA 224
V WT+EYE HH E PH +++ ++D+DA+L A
Sbjct: 8 VHWTMEYEKHHGGYEDPHTLLQFAVDVSKDVDAHLTSA 45
>ref|NP_177243.1| major latex protein (MLP)-related; protein id: At1g70870.1
[Arabidopsis thaliana]
Length = 139
Score = 39.3 bits (90), Expect = 0.012
Identities = 17/49 (34%), Positives = 29/49 (58%)
Frame = -3
Query: 373 LQVIEN*DGHDTVKWTVEYEMHHEEKEPPHGWMEYVHKCTRDIDANLLK 227
LQ+I G +W+ EYE + + P+ +M++ T+DI++NLLK
Sbjct: 90 LQIIPKLHGRSIARWSWEYEKLNADSPAPNKYMDFAVYLTKDIESNLLK 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 322,761,554
Number of Sequences: 1393205
Number of extensions: 6652409
Number of successful extensions: 29291
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 28933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29288
length of database: 448,689,247
effective HSP length: 102
effective length of database: 306,582,337
effective search space used: 7357976088
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
