Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003519A_C01 KMC003519A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172814.1| F-box protein; protein id: At1g13570.1 [Arabido... 67 2e-10
gb|ZP_00082102.1| hypothetical protein [Geobacter metallireducens] 32 5.0
ref|XP_223085.1| similar to novel putative protein similar to YI... 32 6.5
>ref|NP_172814.1| F-box protein; protein id: At1g13570.1 [Arabidopsis thaliana]
gi|25518676|pir||G86268 hypothetical protein F13B4.6 -
Arabidopsis thaliana gi|9802755|gb|AAF99824.1|AC027134_6
Unknown protein [Arabidopsis thaliana]
gi|26451968|dbj|BAC43076.1| unknown protein [Arabidopsis
thaliana]
Length = 416
Score = 66.6 bits (161), Expect = 2e-10
Identities = 32/56 (57%), Positives = 41/56 (73%)
Frame = -3
Query: 604 PIMYNQLETIELYQVSFEDMKEILVVLRLITSSPNLKELQISGSSNIPTAIDNPGF 437
P+ Y L+TIELYQV FED E+LV+LRL+T SPNLKEL++S S P ++ GF
Sbjct: 279 PLTYIHLKTIELYQVCFEDADEVLVLLRLVTHSPNLKELKVSASPVQPFPLEEEGF 334
>gb|ZP_00082102.1| hypothetical protein [Geobacter metallireducens]
Length = 449
Score = 32.3 bits (72), Expect = 5.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 99 YVKYTLVNCN*LTKTQRNAFDNIVHYFTHGQKQ 197
Y+ Y V CN TQ AF++++ F HG K+
Sbjct: 184 YLTYLAVKCNVAASTQNQAFNSLLFLFRHGLKR 216
>ref|XP_223085.1| similar to novel putative protein similar to YIL091C yeast
hypothetical 84 kD protein from SGA1-KTR7 [Homo sapiens]
[Rattus norvegicus]
Length = 628
Score = 32.0 bits (71), Expect = 6.5
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +3
Query: 141 TQRNAFDNIVHYFTHGQKQFLL------*YKLFEISTIRSTFSIEFPCH 269
TQR+ H+F G+KQFLL YK + I IR+ E P +
Sbjct: 517 TQRSGVSRARHFFLQGEKQFLLLTERFHFYKRYTIKGIRNLIFYELPTY 565
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,335,729
Number of Sequences: 1393205
Number of extensions: 10046121
Number of successful extensions: 32874
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32870
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
