Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003518A_C01 KMC003518A_c01
(876 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182272.2| kinesin-related protein; protein id: At2g47500.... 107 3e-22
pir||T00434 probable kinesin heavy chain [imported] - Arabidopsi... 106 4e-22
gb|AAO42115.1| putative kinesin [Arabidopsis thaliana] 106 4e-22
ref|NP_568491.1| kinesin-related protein; protein id: At5g27000.... 57 5e-07
pir||T01775 hypothetical protein A_IG002P16.12 - Arabidopsis tha... 52 9e-06
>ref|NP_182272.2| kinesin-related protein; protein id: At2g47500.1 [Arabidopsis
thaliana]
Length = 974
Score = 107 bits (266), Expect = 3e-22
Identities = 67/176 (38%), Positives = 95/176 (53%), Gaps = 23/176 (13%)
Frame = -2
Query: 857 GCRRPMXEVGNIELQSNTKLRHXTQGFDFDEISANSPPWPPVNV--QSYGEDDRETGYGD 684
G + + G +E+ +N + ++ + +EI+ NSPPWPPV Q+Y EDDR G +
Sbjct: 761 GSEKHKAKTGEVEIHNNNIMTKKSESCEVEEITVNSPPWPPVASPGQAYREDDRSFGSSE 820
Query: 683 WVDKVMVNKQ--DMNKTENLLGCWQSTNGN--LSQAFYQQYLQD---------------- 564
WVDKVMVN + +M + E+L G + NG L + FY++ L
Sbjct: 821 WVDKVMVNNRQDEMRRVESLWGGATTENGIGILPEDFYRRDLASDTSRIFSEHSYNIFMG 880
Query: 563 SSNDMDELDAATSDSSEPDLLWQFNHSKLNSVTNGMGSKIIS-VSKAPATPALDKN 399
++N D+LDAATSDSSEPDLLWQFN S + + SK+ VSK +P N
Sbjct: 881 NNNSTDDLDAATSDSSEPDLLWQFNQSTKIPTRSNIESKLKKPVSKPIRSPQSRNN 936
>pir||T00434 probable kinesin heavy chain [imported] - Arabidopsis thaliana
gi|2529677|gb|AAC62860.1| putative kinesin heavy chain
[Arabidopsis thaliana]
Length = 861
Score = 106 bits (265), Expect = 4e-22
Identities = 66/171 (38%), Positives = 94/171 (54%), Gaps = 23/171 (13%)
Frame = -2
Query: 857 GCRRPMXEVGNIELQSNTKLRHXTQGFDFDEISANSPPWPPVNV--QSYGEDDRETGYGD 684
G + + G +E+ +N + ++ + +EI+ NSPPWPPV Q+Y EDDR G +
Sbjct: 688 GSEKHKAKTGEVEIHNNNIMTKKSESCEVEEITVNSPPWPPVASPGQAYREDDRSFGSSE 747
Query: 683 WVDKVMVNKQ--DMNKTENLLGCWQSTNGN--LSQAFYQQYLQD---------------- 564
WVDKVMVN + +M + E+L G + NG L + FY++ L
Sbjct: 748 WVDKVMVNNRQDEMRRVESLWGGATTENGIGILPEDFYRRDLASDTSRIFSEHSYNIFMG 807
Query: 563 SSNDMDELDAATSDSSEPDLLWQFNHSKLNSVTNGMGSKIIS-VSKAPATP 414
++N D+LDAATSDSSEPDLLWQFN S + + SK+ VSK +P
Sbjct: 808 NNNSTDDLDAATSDSSEPDLLWQFNQSTKIPTRSNIESKLKKPVSKPIRSP 858
>gb|AAO42115.1| putative kinesin [Arabidopsis thaliana]
Length = 983
Score = 106 bits (265), Expect = 4e-22
Identities = 67/176 (38%), Positives = 95/176 (53%), Gaps = 23/176 (13%)
Frame = -2
Query: 857 GCRRPMXEVGNIELQSNTKLRHXTQGFDFDEISANSPPWPPVNV--QSYGEDDRETGYGD 684
G + + G +E+ +N + ++ + +EI+ NSPPWPPV Q+Y EDDR G +
Sbjct: 770 GSEKYKAKTGEVEIHNNNIMTKKSESCEVEEITVNSPPWPPVASPGQAYREDDRSFGSSE 829
Query: 683 WVDKVMVNKQ--DMNKTENLLGCWQSTNGN--LSQAFYQQYLQD---------------- 564
WVDKVMVN + +M + E+L G + NG L + FY++ L
Sbjct: 830 WVDKVMVNNRQDEMRRVESLWGGATTENGIGILPEDFYRRDLASDTSRIFSEHSYNIFMG 889
Query: 563 SSNDMDELDAATSDSSEPDLLWQFNHSKLNSVTNGMGSKIIS-VSKAPATPALDKN 399
++N D+LDAATSDSSEPDLLWQFN S + + SK+ VSK +P N
Sbjct: 890 NNNSTDDLDAATSDSSEPDLLWQFNQSTKIPTRSNIESKLKKPVSKPIRSPQSRNN 945
>ref|NP_568491.1| kinesin-related protein; protein id: At5g27000.1 [Arabidopsis
thaliana]
Length = 987
Score = 56.6 bits (135), Expect = 5e-07
Identities = 50/170 (29%), Positives = 87/170 (50%), Gaps = 12/170 (7%)
Frame = -2
Query: 764 ISANSPPWP--PVNVQSYGEDDRETGYGDWVDK--VMVNKQDMNKTE----NLLGCWQST 609
+ ++SP WP P+N + ++DRE+ G+W+DK ++ Q+ N E +++ QS
Sbjct: 826 MKSSSPAWPRQPLNGK---DEDRESKSGEWIDKHEELIQNQNPNSPEQFYQSMVPQQQSL 882
Query: 608 NGNLSQAFYQQYLQDSSNDMDELDAATSDSSEPDLLW----QFNHSKLNSVTNGMGSKII 441
G Q F Q + D+ +D +AATSD S+ DLLW Q N K++++ N K
Sbjct: 883 YGG-KQDFEVQSITDNESD----EAATSDCSDSDLLWRLSVQVNVPKVSNIQNSANPKPK 937
Query: 440 SVSKAPATPALDKNVVHSSLGASASPSLRRSNSASHRTGRHPASVDAKRK 291
+ A + ++++ S + A PS R N+ + + R + D KR+
Sbjct: 938 KIQPRTAKLSETRSLIPSLIPA---PSKRPPNTVNSQPQR--PTRDGKRR 982
>pir||T01775 hypothetical protein A_IG002P16.12 - Arabidopsis thaliana
gi|2191180|gb|AAB61066.1| Similar to kinesin; coded for
by A. thaliana cDNA W43760 [Arabidopsis thaliana]
Length = 921
Score = 52.4 bits (124), Expect = 9e-06
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 16/174 (9%)
Frame = -2
Query: 764 ISANSPPWP--PVNVQSYGEDDRETGYGDWVDK--VMVNKQDMNKTENLLGCWQSTNGNL 597
+ ++SP WP P+N + ++DRE+ G+W+DK ++ Q+ N E +L
Sbjct: 751 MKSSSPAWPRQPLNGK---DEDRESKSGEWIDKHEELIQNQNPNSPEQFYQSMVPQQQSL 807
Query: 596 SQAFYQQYL----QD----SSNDMDELDAATSDSSEPDLLW----QFNHSKLNSVTNGMG 453
+ Y+ QD S D + +AATSD S+ DLLW Q N K++++ N
Sbjct: 808 YVIHFIIYIYGGKQDFEVQSITDNESDEAATSDCSDSDLLWRLSVQVNVPKVSNIQNSAN 867
Query: 452 SKIISVSKAPATPALDKNVVHSSLGASASPSLRRSNSASHRTGRHPASVDAKRK 291
K + A + ++++ S + A PS R N+ + + R + D KR+
Sbjct: 868 PKPKKIQPRTAKLSETRSLIPSLIPA---PSKRPPNTVNSQPQR--PTRDGKRR 916
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 771,449,959
Number of Sequences: 1393205
Number of extensions: 17115631
Number of successful extensions: 51295
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 48305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51196
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47103382053
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
