Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003514A_C01 KMC003514A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F86214 protein T6D22.2 [imported] - Arabidopsis thaliana gi... 181 7e-45
sp|P17786|EF1A_LYCES ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) gi|8... 164 5e-40
dbj|BAC23049.1| Elongation factor 1-alpha [Solanum tuberosum] 164 5e-40
emb|CAA09041.1| elongation factor 1-alpha [Cicer arietinum] 162 2e-39
emb|CAA06245.1| elongation factor 1-alpha (EF1-a) [Cicer arietinum] 162 2e-39
>pir||F86214 protein T6D22.2 [imported] - Arabidopsis thaliana
gi|8778823|gb|AAF79822.1|AC026875_2 T6D22.2 [Arabidopsis
thaliana]
Length = 967
Score = 181 bits (458), Expect = 7e-45
Identities = 102/155 (65%), Positives = 115/155 (73%)
Frame = -2
Query: 549 FGELLTKIDRRSG*ELEKEPKFLKNGDAGLVKMIPTQPMVVETFSEYPPLGRFAVRDMRQ 370
F E+LTKIDRRSG E+EKEPKFLKNGDAG+VKM PT+PMVVETFSEYPPLGRFAVRDMRQ
Sbjct: 360 FSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQ 419
Query: 369 TVAVGVIKSVEKKDPTGAKVTKAAQKKGK*TVLIGSSSEVNYYDYNKCCYLALSTSVACL 190
TVAVGVIKSV+KKDPTGAKVTKAA KKG+ S V++ YL VACL
Sbjct: 420 TVAVGVIKSVDKKDPTGAKVTKAAVKKGE------SKDSVSFITI--VWYL-----VACL 466
Query: 189 VFLFIGHLLKSPPSSRSFCSQNWVLDRRWRGFSFL 85
F+ PS R CS+NWVLDRRWR ++ +
Sbjct: 467 CSCFV-----FSPSER--CSRNWVLDRRWRIYTHI 494
Score = 160 bits (404), Expect = 1e-38
Identities = 79/88 (89%), Positives = 84/88 (94%)
Frame = -2
Query: 549 FGELLTKIDRRSG*ELEKEPKFLKNGDAGLVKMIPTQPMVVETFSEYPPLGRFAVRDMRQ 370
F E+LTKIDRRSG E+EKEPKFLKNGDAG+VKM PT+PMVVETFSEYPPLGRFAVRDMRQ
Sbjct: 878 FSEILTKIDRRSGKEIEKEPKFLKNGDAGMVKMTPTKPMVVETFSEYPPLGRFAVRDMRQ 937
Query: 369 TVAVGVIKSVEKKDPTGAKVTKAAQKKG 286
TVAVGVIKSV+KKDPTGAKVTKAA KKG
Sbjct: 938 TVAVGVIKSVDKKDPTGAKVTKAAVKKG 965
>sp|P17786|EF1A_LYCES ELONGATION FACTOR 1-ALPHA (EF-1-ALPHA) gi|82081|pir||S10507
translation elongation factor eEF-1 alpha chain - tomato
gi|19273|emb|CAA32618.1| EF 1-alpha (AA 1-448)
[Lycopersicon esculentum] gi|295810|emb|CAA37212.1|
elongation factor 1-alpha [Lycopersicon esculentum]
Length = 448
Score = 164 bits (416), Expect = 5e-40
Identities = 80/89 (89%), Positives = 87/89 (96%)
Frame = -2
Query: 549 FGELLTKIDRRSG*ELEKEPKFLKNGDAGLVKMIPTQPMVVETFSEYPPLGRFAVRDMRQ 370
F E+LTKIDRRSG ELEKEPKFLKNGDAG+VKMIPT+PMVVETF+EYPPLGRFAVRDMRQ
Sbjct: 360 FAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQ 419
Query: 369 TVAVGVIKSVEKKDPTGAKVTKAAQKKGK 283
TVAVGV+K+V+KKDPTGAKVTKAAQKKGK
Sbjct: 420 TVAVGVVKNVDKKDPTGAKVTKAAQKKGK 448
>dbj|BAC23049.1| Elongation factor 1-alpha [Solanum tuberosum]
Length = 448
Score = 164 bits (416), Expect = 5e-40
Identities = 80/89 (89%), Positives = 87/89 (96%)
Frame = -2
Query: 549 FGELLTKIDRRSG*ELEKEPKFLKNGDAGLVKMIPTQPMVVETFSEYPPLGRFAVRDMRQ 370
F E+LTKIDRRSG ELEKEPKFLKNGDAG+VKMIPT+PMVVETF+EYPPLGRFAVRDMRQ
Sbjct: 360 FAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDMRQ 419
Query: 369 TVAVGVIKSVEKKDPTGAKVTKAAQKKGK 283
TVAVGV+K+V+KKDPTGAKVTKAAQKKGK
Sbjct: 420 TVAVGVVKNVDKKDPTGAKVTKAAQKKGK 448
>emb|CAA09041.1| elongation factor 1-alpha [Cicer arietinum]
Length = 130
Score = 162 bits (411), Expect = 2e-39
Identities = 82/87 (94%), Positives = 84/87 (96%)
Frame = -2
Query: 549 FGELLTKIDRRSG*ELEKEPKFLKNGDAGLVKMIPTQPMVVETFSEYPPLGRFAVRDMRQ 370
F ELLTKIDRRSG ELEKEPKFLKNGDAGLVKMIPT+PMVVETFSEYPPLGRFAVRDMRQ
Sbjct: 43 FAELLTKIDRRSGKELEKEPKFLKNGDAGLVKMIPTKPMVVETFSEYPPLGRFAVRDMRQ 102
Query: 369 TVAVGVIKSVEKKDPTGAKVTKAAQKK 289
TVAVGVIKSVEKKDPTGAK+TKAA KK
Sbjct: 103 TVAVGVIKSVEKKDPTGAKITKAAVKK 129
>emb|CAA06245.1| elongation factor 1-alpha (EF1-a) [Cicer arietinum]
Length = 326
Score = 162 bits (411), Expect = 2e-39
Identities = 82/87 (94%), Positives = 84/87 (96%)
Frame = -2
Query: 549 FGELLTKIDRRSG*ELEKEPKFLKNGDAGLVKMIPTQPMVVETFSEYPPLGRFAVRDMRQ 370
F ELLTKIDRRSG ELEKEPKFLKNGDAGLVKMIPT+PMVVETFSEYPPLGRFAVRDMRQ
Sbjct: 239 FAELLTKIDRRSGKELEKEPKFLKNGDAGLVKMIPTKPMVVETFSEYPPLGRFAVRDMRQ 298
Query: 369 TVAVGVIKSVEKKDPTGAKVTKAAQKK 289
TVAVGVIKSVEKKDPTGAK+TKAA KK
Sbjct: 299 TVAVGVIKSVEKKDPTGAKITKAAVKK 325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,948,263
Number of Sequences: 1393205
Number of extensions: 9885591
Number of successful extensions: 28653
Number of sequences better than 10.0: 1422
Number of HSP's better than 10.0 without gapping: 27354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28537
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
