Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003512A_C01 KMC003512A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB83260.1| beta-D-galactosidase [Persea americana] 67 2e-10
emb|CAA06310.1| beta-galactosidase [Cicer arietinum] 65 5e-10
emb|CAA06309.1| beta-galactosidase [Cicer arietinum] 65 5e-10
emb|CAA09457.1| beta-galactosidase [Cicer arietinum] 65 9e-10
dbj|BAB84455.1| putative beta-galactosidase [Oryza sativa (japon... 64 2e-09
>dbj|BAB83260.1| beta-D-galactosidase [Persea americana]
Length = 766
Score = 66.6 bits (161), Expect = 2e-10
Identities = 28/34 (82%), Positives = 33/34 (96%)
Frame = -3
Query: 607 YHIPRSWLNPSGNLVVVLEEFGGDPTGISLVKRT 506
YHIPRSWLNP+GNL+VV EE+GGDPTGI+LV+RT
Sbjct: 700 YHIPRSWLNPTGNLLVVFEEWGGDPTGITLVRRT 733
>emb|CAA06310.1| beta-galactosidase [Cicer arietinum]
Length = 307
Score = 65.5 bits (158), Expect = 5e-10
Identities = 28/34 (82%), Positives = 32/34 (93%)
Frame = -3
Query: 607 YHIPRSWLNPSGNLVVVLEEFGGDPTGISLVKRT 506
YHIPRSW+NP GN +VVLEE+GGDP+GISLVKRT
Sbjct: 274 YHIPRSWVNPRGNFLVVLEEWGGDPSGISLVKRT 307
>emb|CAA06309.1| beta-galactosidase [Cicer arietinum]
Length = 730
Score = 65.5 bits (158), Expect = 5e-10
Identities = 28/34 (82%), Positives = 32/34 (93%)
Frame = -3
Query: 607 YHIPRSWLNPSGNLVVVLEEFGGDPTGISLVKRT 506
YHIPRSW+NP GN +VVLEE+GGDP+GISLVKRT
Sbjct: 697 YHIPRSWVNPRGNFLVVLEEWGGDPSGISLVKRT 730
>emb|CAA09457.1| beta-galactosidase [Cicer arietinum]
Length = 723
Score = 64.7 bits (156), Expect = 9e-10
Identities = 27/33 (81%), Positives = 33/33 (99%)
Frame = -3
Query: 607 YHIPRSWLNPSGNLVVVLEEFGGDPTGISLVKR 509
YHIPRSWLNP+GN++VVLEE+GGDP+GISL+KR
Sbjct: 690 YHIPRSWLNPTGNVLVVLEEWGGDPSGISLLKR 722
>dbj|BAB84455.1| putative beta-galactosidase [Oryza sativa (japonica
cultivar-group)]
Length = 827
Score = 63.9 bits (154), Expect = 2e-09
Identities = 25/34 (73%), Positives = 33/34 (96%)
Frame = -3
Query: 607 YHIPRSWLNPSGNLVVVLEEFGGDPTGISLVKRT 506
YH+PRSWL+P+GNL+V+ EE+GGDPTGIS+VKR+
Sbjct: 686 YHVPRSWLSPTGNLLVIFEEWGGDPTGISMVKRS 719
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,099,439
Number of Sequences: 1393205
Number of extensions: 10877719
Number of successful extensions: 25320
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 24702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25312
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
