Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003511A_C01 KMC003511A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC69955.1| granule-bound starch synthase [Pisum sativum] 207 9e-53
gb|AAG43519.1|AF210699_1 granule-bound starch synthase [Perilla ... 191 8e-48
sp|O82627|UGST_ANTMA Granule-bound glycogen [starch] synthase, c... 191 8e-48
gb|AAL58572.1| granule binding starch synthase II precursor [Ory... 188 4e-47
emb|CAA58220.1| starch (bacterial glycogen) synthase [Solanum tu... 188 5e-47
>emb|CAC69955.1| granule-bound starch synthase [Pisum sativum]
Length = 613
Score = 207 bits (527), Expect = 9e-53
Identities = 99/120 (82%), Positives = 111/120 (92%)
Frame = -2
Query: 609 IQLQAMRYGTVPIVASTGGLVDTVKEGFTGFQMGSFNVECEAVDPADVDALAKTVKRALA 430
IQLQAMRYGTVPIVASTGGLVDTVKEGFTGF MGSFNV+C+AVDP DVDA+ KTV +AL
Sbjct: 494 IQLQAMRYGTVPIVASTGGLVDTVKEGFTGFHMGSFNVKCDAVDPVDVDAIPKTVTKALG 553
Query: 429 VHGTLAFTEIIKNCMAQDLSWKGPAKRWEEVLLSLGVPGSEAGIEGEEIAPQAKENLATP 250
V+GT AF E+IKNCMAQ+LSWKGPAK+WEEVLL+LGVP SE GI+G+EIAPQAKEN+ATP
Sbjct: 554 VYGTSAFAEMIKNCMAQELSWKGPAKKWEEVLLNLGVPDSEPGIDGQEIAPQAKENVATP 613
>gb|AAG43519.1|AF210699_1 granule-bound starch synthase [Perilla frutescens]
Length = 604
Score = 191 bits (484), Expect = 8e-48
Identities = 93/120 (77%), Positives = 103/120 (85%)
Frame = -2
Query: 609 IQLQAMRYGTVPIVASTGGLVDTVKEGFTGFQMGSFNVECEAVDPADVDALAKTVKRALA 430
IQL AMRYGT+PI ASTGGLVDTVKEGFTGF MG+FNVEC+AVDPADV + KTV RAL
Sbjct: 485 IQLHAMRYGTIPICASTGGLVDTVKEGFTGFHMGAFNVECDAVDPADVLKIVKTVGRALE 544
Query: 429 VHGTLAFTEIIKNCMAQDLSWKGPAKRWEEVLLSLGVPGSEAGIEGEEIAPQAKENLATP 250
V+GT AF E+I NCM+ DLSWKGPAK WE VLLSLGV GSE G+EG+EIAP AKEN+ATP
Sbjct: 545 VYGTPAFREMINNCMSLDLSWKGPAKNWETVLLSLGVAGSEPGVEGDEIAPLAKENVATP 604
>sp|O82627|UGST_ANTMA Granule-bound glycogen [starch] synthase, chloroplast precursor
(GBSSI) gi|3688123|emb|CAA06958.1| granule-bound starch
synthase [Antirrhinum majus]
Length = 608
Score = 191 bits (484), Expect = 8e-48
Identities = 90/120 (75%), Positives = 105/120 (87%)
Frame = -2
Query: 609 IQLQAMRYGTVPIVASTGGLVDTVKEGFTGFQMGSFNVECEAVDPADVDALAKTVKRALA 430
IQL AMRYGT+PI ASTGGLVDTV EGFTGF MG+FNVEC VDPADV +A TV+RALA
Sbjct: 489 IQLHAMRYGTIPICASTGGLVDTVTEGFTGFHMGAFNVECATVDPADVQKIATTVERALA 548
Query: 429 VHGTLAFTEIIKNCMAQDLSWKGPAKRWEEVLLSLGVPGSEAGIEGEEIAPQAKENLATP 250
+G++A+ E+I+NCMAQDLSWKGPAK WE++LLSLGV GSE G++GEEIAP AKEN+ATP
Sbjct: 549 AYGSVAYKEMIQNCMAQDLSWKGPAKNWEKMLLSLGVSGSEPGVDGEEIAPLAKENVATP 608
>gb|AAL58572.1| granule binding starch synthase II precursor [Oryza sativa]
Length = 608
Score = 188 bits (478), Expect = 4e-47
Identities = 91/120 (75%), Positives = 101/120 (83%)
Frame = -2
Query: 609 IQLQAMRYGTVPIVASTGGLVDTVKEGFTGFQMGSFNVECEAVDPADVDALAKTVKRALA 430
IQLQ MRYG VPI +STGGLVDTVKEG TGF MG FNVECE VDP DV A+A TVKRAL
Sbjct: 489 IQLQGMRYGVVPICSSTGGLVDTVKEGVTGFHMGLFNVECETVDPVDVTAVASTVKRALK 548
Query: 429 VHGTLAFTEIIKNCMAQDLSWKGPAKRWEEVLLSLGVPGSEAGIEGEEIAPQAKENLATP 250
+ T AF E+++NCMAQDLSWKGPAK+WEEVLL LGV GS+ GIEGEE+AP AKEN+ATP
Sbjct: 549 QYNTPAFQEMVQNCMAQDLSWKGPAKKWEEVLLGLGVEGSQPGIEGEEVAPLAKENVATP 608
>emb|CAA58220.1| starch (bacterial glycogen) synthase [Solanum tuberosum]
Length = 607
Score = 188 bits (477), Expect = 5e-47
Identities = 90/120 (75%), Positives = 103/120 (85%)
Frame = -2
Query: 609 IQLQAMRYGTVPIVASTGGLVDTVKEGFTGFQMGSFNVECEAVDPADVDALAKTVKRALA 430
IQL AMRYGTVPI ASTGGLVDTVKEG+TGF MG+FNVEC+ VDPADV + TV RALA
Sbjct: 488 IQLHAMRYGTVPICASTGGLVDTVKEGYTGFHMGAFNVECDVVDPADVLKIVTTVARALA 547
Query: 429 VHGTLAFTEIIKNCMAQDLSWKGPAKRWEEVLLSLGVPGSEAGIEGEEIAPQAKENLATP 250
V+GTLAF E+IKNCM+++LSWK PAK+WE +LL LG GSE G+EGEEIAP AKEN+ATP
Sbjct: 548 VYGTLAFAEMIKNCMSEELSWKEPAKKWETLLLGLGASGSEPGVEGEEIAPLAKENVATP 607
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,258,357
Number of Sequences: 1393205
Number of extensions: 11381311
Number of successful extensions: 33053
Number of sequences better than 10.0: 397
Number of HSP's better than 10.0 without gapping: 31095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32872
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
