Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003509A_C01 KMC003509A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196062.1| putative protein; protein id: At5g04420.1, supp... 58 6e-08
gb|AAL06496.1|AF412043_1 AT5g04420/T32M21_20 [Arabidopsis thaliana] 58 6e-08
ref|NP_187193.1| unknown protein; protein id: At3g05420.1 [Arabi... 45 5e-04
ref|NP_198115.2| putative protein; protein id: At5g27630.1, supp... 45 5e-04
gb|AAD13198.1| putative methyl-accepting chemotaxis protein [Des... 33 1.9
>ref|NP_196062.1| putative protein; protein id: At5g04420.1, supported by cDNA:
gi_15724205 [Arabidopsis thaliana]
gi|11358331|pir||T48438 hypothetical protein T32M21.20 -
Arabidopsis thaliana gi|7406446|emb|CAB85548.1| putative
protein [Arabidopsis thaliana]
Length = 514
Score = 58.2 bits (139), Expect = 6e-08
Identities = 30/52 (57%), Positives = 37/52 (70%)
Frame = -1
Query: 517 EAKIAELQKLLESMQSVEDQVQALRQKNSALDQELAATAQRQNSGGGWRWFG 362
EA+IAELQK LES QS+E +V+ LR++ SA D+E T QRQ S G W FG
Sbjct: 462 EAQIAELQKALESGQSIEAEVEMLRRQRSASDEEEDGTVQRQGSAGVWGLFG 513
>gb|AAL06496.1|AF412043_1 AT5g04420/T32M21_20 [Arabidopsis thaliana]
Length = 514
Score = 58.2 bits (139), Expect = 6e-08
Identities = 30/52 (57%), Positives = 37/52 (70%)
Frame = -1
Query: 517 EAKIAELQKLLESMQSVEDQVQALRQKNSALDQELAATAQRQNSGGGWRWFG 362
EA+IAELQK LES QS+E +V+ LR++ SA D+E T QRQ S G W FG
Sbjct: 462 EAQIAELQKALESGQSIEAEVEMLRRQRSASDEEEDGTVQRQGSAGVWGLFG 513
>ref|NP_187193.1| unknown protein; protein id: At3g05420.1 [Arabidopsis thaliana]
gi|7596769|gb|AAF64540.1| unknown protein [Arabidopsis
thaliana]
Length = 668
Score = 45.1 bits (105), Expect = 5e-04
Identities = 20/58 (34%), Positives = 38/58 (65%)
Frame = -1
Query: 517 EAKIAELQKLLESMQSVEDQVQALRQKNSALDQELAATAQRQNSGGGWRWFGGSEK*K 344
E +AEL++ L+++++++ +++ L Q+ A ++ A A+RQ SGG W W GS + K
Sbjct: 607 EVDVAELRQKLQTLETLQKELELL-QRQKAASEQAAMNAKRQGSGGVWGWLAGSPQEK 663
>ref|NP_198115.2| putative protein; protein id: At5g27630.1, supported by cDNA:
gi_20260513 [Arabidopsis thaliana]
gi|20260514|gb|AAM13155.1| unknown protein [Arabidopsis
thaliana]
Length = 648
Score = 45.1 bits (105), Expect = 5e-04
Identities = 20/55 (36%), Positives = 38/55 (68%), Gaps = 1/55 (1%)
Frame = -1
Query: 517 EAKIAELQKLLESMQSVEDQVQAL-RQKNSALDQELAATAQRQNSGGGWRWFGGS 356
E ++AEL++ L++M++++ +++ L RQ+ A +Q A+RQ+SGG W W G+
Sbjct: 589 EVEVAELRQKLQTMETLQKELELLQRQRAVASEQAATMNAKRQSSGGVWGWLAGT 643
>gb|AAD13198.1| putative methyl-accepting chemotaxis protein [Desulfovibrio gigas]
Length = 649
Score = 33.1 bits (74), Expect = 1.9
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Frame = -1
Query: 505 AELQKLLESMQSVEDQVQALR-------QKNSALDQELAATAQRQNSGGG 377
AE+ KL + +V ++ L QK + L QE+AAT+Q QNSG G
Sbjct: 484 AEINKLSSTSTAVAERAGTLLEKLVPDIQKTADLVQEIAATSQEQNSGAG 533
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,579,109
Number of Sequences: 1393205
Number of extensions: 9844815
Number of successful extensions: 30891
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30869
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
