Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003507A_C01 KMC003507A_c01
(659 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC57702.1| putative auxin-regulated protein [Oryza sativa (... 77 2e-13
ref|NP_568935.1| auxin-regulated protein; protein id: At5g61530.... 74 2e-12
gb|AAM62686.1| unknown [Arabidopsis thaliana] 74 2e-12
gb|AAO52539.1| hypothetical protein [Dictyostelium discoideum] 32 5.8
ref|NP_373178.1| hypothetical protein [Staphylococcus aureus sub... 32 9.8
>dbj|BAC57702.1| putative auxin-regulated protein [Oryza sativa (japonica
cultivar-group)]
Length = 369
Score = 77.0 bits (188), Expect = 2e-13
Identities = 36/57 (63%), Positives = 45/57 (78%)
Frame = -3
Query: 648 SSTASYTLSDDSEVIDASSPIPLDDGMPVDFDAIEVVQLLIEHHNAVFTDANETVWK 478
S+T + L D+ +V DASS IPLDD P D+ +IEV+Q LIEHHNA+FTDANETVW+
Sbjct: 314 SNTTEWDLLDEDDV-DASSQIPLDDASPPDYSSIEVIQSLIEHHNAIFTDANETVWR 369
>ref|NP_568935.1| auxin-regulated protein; protein id: At5g61530.1, supported by
cDNA: 152557., supported by cDNA: gi_15028202
[Arabidopsis thaliana] gi|15028203|gb|AAK76598.1|
unknown protein [Arabidopsis thaliana]
gi|22136944|gb|AAM91816.1| unknown protein [Arabidopsis
thaliana]
Length = 376
Score = 73.6 bits (179), Expect = 2e-12
Identities = 36/50 (72%), Positives = 40/50 (80%)
Frame = -3
Query: 627 LSDDSEVIDASSPIPLDDGMPVDFDAIEVVQLLIEHHNAVFTDANETVWK 478
LSD+ E DASS IPLDD VDF A+EVVQ LIEHHNA+FTDA ETVW+
Sbjct: 327 LSDEGEGPDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376
>gb|AAM62686.1| unknown [Arabidopsis thaliana]
Length = 376
Score = 73.6 bits (179), Expect = 2e-12
Identities = 36/50 (72%), Positives = 40/50 (80%)
Frame = -3
Query: 627 LSDDSEVIDASSPIPLDDGMPVDFDAIEVVQLLIEHHNAVFTDANETVWK 478
LSD+ E DASS IPLDD VDF A+EVVQ LIEHHNA+FTDA ETVW+
Sbjct: 327 LSDEGEGPDASSSIPLDDIARVDFGAVEVVQCLIEHHNAIFTDAAETVWR 376
>gb|AAO52539.1| hypothetical protein [Dictyostelium discoideum]
Length = 318
Score = 32.3 bits (72), Expect = 5.8
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
Frame = +2
Query: 347 NIFHSVMLSITSKIAAIYDLHGQI-----GGSYSKSKTIQHRIRSKAIYFQTVSFASVKT 511
N FHSV + + I Y LHG G S + + T I S + T S+AS
Sbjct: 80 NGFHSVFILVDGLI--YYTLHGAFYYYDSGASSATTTTNPSTIFSSSTTTTTTSYASTAY 137
Query: 512 AL*CSISN*TTSIASKSTGMPSSKGIGEDASMTSLSSES 628
+ + S +T+ +S +TG PS+ S S SS S
Sbjct: 138 SS-STTSYPSTTYSSSTTGYPSTTFSSSTTSYPSSSSSS 175
>ref|NP_373178.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
gi|15928240|ref|NP_375773.1| hypothetical protein,
similar to streptococcal hemagglutinin protein
[Staphylococcus aureus subsp. aureus N315]
gi|25507441|pir||F90073 hypothetical protein SA2447
[imported] - Staphylococcus aureus (strain N315)
gi|13702612|dbj|BAB43752.1| SA2447 [Staphylococcus aureus
subsp. aureus N315] gi|14248429|dbj|BAB58816.1|
hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
Length = 2271
Score = 31.6 bits (70), Expect = 9.8
Identities = 34/143 (23%), Positives = 61/143 (41%), Gaps = 8/143 (5%)
Frame = +2
Query: 251 AVQKKYKVIGPIPKPRRVQKSDTLITKTGPV----SNIFHSVMLSITSKIAAIYDLHGQI 418
+V K + I +KS++L T T +++ S+ +S + ++ L I
Sbjct: 842 SVSKSTSLSDSISNSNSTEKSESLSTSTSDSLRTSTSLSDSLSMSTSGSLSKSQSLSTSI 901
Query: 419 GGSYSKSKTIQHRIRSKAIYFQTVSFASVKTA----L*CSISN*TTSIASKSTGMPSSKG 586
GS S S ++ S AI T S T+ + SI+N ++ SKS +S
Sbjct: 902 SGSSSTSASLSDST-SNAISTSTSLSESASTSDSISISNSIANSQSASTSKSDSQSTSIS 960
Query: 587 IGEDASMTSLSSESVYEAVDEPG 655
+ S + +SES+ ++ G
Sbjct: 961 LSTSDSKSMSTSESLSDSTSTSG 983
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,353,158
Number of Sequences: 1393205
Number of extensions: 11555056
Number of successful extensions: 23896
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 23188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23888
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
