Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003506A_C01 KMC003506A_c01
(759 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42425.1| unknown protein [Arabidopsis thaliana] 69 7e-11
pir||T49004 transporter-like protein - Arabidopsis thaliana gi|7... 63 4e-09
ref|NP_567083.1| transporter-like protein; protein id: At3g59360... 63 4e-09
ref|NP_181853.1| unknown protein; protein id: At2g43240.1 [Arabi... 54 3e-06
emb|CAD41134.1| OSJNBa0084K20.14 [Oryza sativa (japonica cultiva... 51 2e-05
>dbj|BAC42425.1| unknown protein [Arabidopsis thaliana]
Length = 406
Score = 68.9 bits (167), Expect = 7e-11
Identities = 33/51 (64%), Positives = 40/51 (77%)
Frame = -3
Query: 757 KAKEEEQNGVVELHDVHDKQRSKESFINMAAGANEEATHRTGHDERHPLLP 605
KAK+E+QNG +EL D D R+K+SFINMAAGA EEA+HR D+R PLLP
Sbjct: 355 KAKDEQQNGNIELVDAKDGHRAKDSFINMAAGATEEASHRIESDDRVPLLP 405
>pir||T49004 transporter-like protein - Arabidopsis thaliana
gi|7801686|emb|CAB91606.1| transporter-like protein
[Arabidopsis thaliana]
Length = 458
Score = 63.2 bits (152), Expect = 4e-09
Identities = 30/48 (62%), Positives = 37/48 (76%)
Frame = -3
Query: 748 EEEQNGVVELHDVHDKQRSKESFINMAAGANEEATHRTGHDERHPLLP 605
E++QNG +EL + D R+ ESFINMAAGANEEA+HR D+R PLLP
Sbjct: 410 EQQQNGNLELGNTKDTHRANESFINMAAGANEEASHRGESDDRTPLLP 457
>ref|NP_567083.1| transporter-like protein; protein id: At3g59360.1, supported by
cDNA: gi_13430657 [Arabidopsis thaliana]
gi|13430658|gb|AAK25951.1|AF360241_1 putative
transporter protein [Arabidopsis thaliana]
gi|14532830|gb|AAK64097.1| putative transporter protein
[Arabidopsis thaliana]
Length = 405
Score = 63.2 bits (152), Expect = 4e-09
Identities = 30/48 (62%), Positives = 37/48 (76%)
Frame = -3
Query: 748 EEEQNGVVELHDVHDKQRSKESFINMAAGANEEATHRTGHDERHPLLP 605
E++QNG +EL + D R+ ESFINMAAGANEEA+HR D+R PLLP
Sbjct: 357 EQQQNGNLELGNTKDTHRANESFINMAAGANEEASHRGESDDRTPLLP 404
>ref|NP_181853.1| unknown protein; protein id: At2g43240.1 [Arabidopsis thaliana]
gi|25408848|pir||G84863 hypothetical protein At2g43240
[imported] - Arabidopsis thaliana
gi|3763933|gb|AAC64313.1| unknown protein [Arabidopsis
thaliana]
Length = 806
Score = 53.5 bits (127), Expect = 3e-06
Identities = 25/38 (65%), Positives = 31/38 (80%)
Frame = -3
Query: 757 KAKEEEQNGVVELHDVHDKQRSKESFINMAAGANEEAT 644
KAK+E+QNG +EL D D R+K+SFINMAAGA EE+T
Sbjct: 413 KAKDEQQNGNIELVDAKDGHRAKDSFINMAAGATEEST 450
>emb|CAD41134.1| OSJNBa0084K20.14 [Oryza sativa (japonica cultivar-group)]
Length = 405
Score = 51.2 bits (121), Expect = 2e-05
Identities = 23/51 (45%), Positives = 33/51 (64%)
Frame = -3
Query: 757 KAKEEEQNGVVELHDVHDKQRSKESFINMAAGANEEATHRTGHDERHPLLP 605
K K+++ G +E D + + S SF+NM AGA ++A+H T DER PLLP
Sbjct: 354 KVKDDKPAGALEPEDAQNHRSSDSSFVNMTAGAADDASHLTATDERKPLLP 404
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 660,793,576
Number of Sequences: 1393205
Number of extensions: 14770125
Number of successful extensions: 37901
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 35857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37803
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
