Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003504A_C01 KMC003504A_c01
(656 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178071.1| glyceraldehyde-3-phosphate dehydrogenase, putat... 169 3e-41
pir||S51837 glyceraldehyde-3-phosphate dehydrogenase (phosphoryl... 167 1e-40
emb|CAA04942.1| NAD-dependent glyceraldehyde-3-phosphate dehydro... 165 6e-40
pir||S51836 glyceraldehyde-3-phosphate dehydrogenase (phosphoryl... 165 6e-40
emb|CAC80377.1| glyceraldehyde-3-phosphate dehydrogenase [Capsic... 163 2e-39
>ref|NP_178071.1| glyceraldehyde-3-phosphate dehydrogenase, putative; protein id:
At1g79530.1, supported by cDNA: gi_13194783 [Arabidopsis
thaliana] gi|25284333|pir||F96826 hypothetical protein
T8K14.5 [imported] - Arabidopsis thaliana
gi|4835756|gb|AAD30223.1|AC007202_5 Is a member of the
PF|00044 glyceraldehyde 3-phosphate dehydrogenase
family. ESTs gb|T43985, gb|N38667, gb|N65037,
gb|AA713069 and gb|AI099548 come from this gene.
[Arabidopsis thaliana]
gi|13194784|gb|AAK15554.1|AF348583_1 putative
glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis
thaliana] gi|26450902|dbj|BAC42558.1| unknown protein
[Arabidopsis thaliana]
Length = 422
Score = 169 bits (428), Expect = 3e-41
Identities = 82/93 (88%), Positives = 86/93 (92%)
Frame = -1
Query: 656 DLTCRLQKNASYEDVKAAIKRASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIAL 477
DLTCRL+K ASYEDVKAAIK ASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDA AGI L
Sbjct: 328 DLTCRLEKGASYEDVKAAIKHASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDANAGIGL 387
Query: 476 SASFVKMVSWYDNEWGYSNRVLDLVGHMALVGS 378
S SFVK+VSWYDNEWGYSNRVLDL+ HMALV +
Sbjct: 388 SKSFVKLVSWYDNEWGYSNRVLDLIEHMALVAA 420
>pir||S51837 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC
1.2.1.12) precursor - Scotch pine
gi|1100225|gb|AAD10214.1| glyceraldehyde-3-phosphate
dehydrogenase [Pinus sylvestris]
Length = 433
Score = 167 bits (423), Expect = 1e-40
Identities = 79/93 (84%), Positives = 89/93 (94%)
Frame = -1
Query: 656 DLTCRLQKNASYEDVKAAIKRASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIAL 477
DLTCRL+K ASY+D+KAA+K ASEG LKGILGYTDEDVVSNDFVGD+RSSIFDAKAGIAL
Sbjct: 339 DLTCRLEKPASYDDIKAAMKAASEGSLKGILGYTDEDVVSNDFVGDARSSIFDAKAGIAL 398
Query: 476 SASFVKMVSWYDNEWGYSNRVLDLVGHMALVGS 378
S++FVK+VSWYDNEWGYSNRV+DL+ HMALVGS
Sbjct: 399 SSTFVKLVSWYDNEWGYSNRVVDLISHMALVGS 431
>emb|CAA04942.1| NAD-dependent glyceraldehyde-3-phosphate dehydrogenase [Pinus
sylvestris]
Length = 365
Score = 165 bits (417), Expect = 6e-40
Identities = 78/93 (83%), Positives = 88/93 (93%)
Frame = -1
Query: 656 DLTCRLQKNASYEDVKAAIKRASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIAL 477
DLTCRL+K ASY+D+KAA+K ASEG LKGILGYTDEDVVSNDFVGD+RSSIFDAKAGIAL
Sbjct: 271 DLTCRLEKPASYDDIKAAMKAASEGSLKGILGYTDEDVVSNDFVGDARSSIFDAKAGIAL 330
Query: 476 SASFVKMVSWYDNEWGYSNRVLDLVGHMALVGS 378
S++FVK+VSWYDNEWGYSNRV+DL+ HMALV S
Sbjct: 331 SSTFVKLVSWYDNEWGYSNRVVDLISHMALVAS 363
>pir||S51836 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC
1.2.1.12) precursor - Scotch pine
gi|1100223|gb|AAD10215.1| glyceraldehyde-3-phosphate
dehydrogenase [Pinus sylvestris]
Length = 433
Score = 165 bits (417), Expect = 6e-40
Identities = 78/93 (83%), Positives = 88/93 (93%)
Frame = -1
Query: 656 DLTCRLQKNASYEDVKAAIKRASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIAL 477
DLTCRL+K ASY+D+KAA+K ASEG LKGILGYTDEDVVSNDFVGD+RSSIFDAKAGIAL
Sbjct: 339 DLTCRLEKPASYDDIKAAMKAASEGSLKGILGYTDEDVVSNDFVGDARSSIFDAKAGIAL 398
Query: 476 SASFVKMVSWYDNEWGYSNRVLDLVGHMALVGS 378
S++FVK+VSWYDNEWGYSNRV+DL+ HMALV S
Sbjct: 399 SSTFVKLVSWYDNEWGYSNRVVDLISHMALVAS 431
>emb|CAC80377.1| glyceraldehyde-3-phosphate dehydrogenase [Capsicum annuum]
gi|26986729|emb|CAC88118.1| glyceraldehyde-3-phosphate
dehydrogenase [Capsicum annuum]
Length = 419
Score = 163 bits (413), Expect = 2e-39
Identities = 79/93 (84%), Positives = 86/93 (91%)
Frame = -1
Query: 656 DLTCRLQKNASYEDVKAAIKRASEGPLKGILGYTDEDVVSNDFVGDSRSSIFDAKAGIAL 477
DLTCRL K+ASY+DVKAAIK ASEGPLKGILGYT+EDVVSNDFVGDSRSSIFDAKAGI L
Sbjct: 325 DLTCRLNKSASYDDVKAAIKYASEGPLKGILGYTNEDVVSNDFVGDSRSSIFDAKAGIGL 384
Query: 476 SASFVKMVSWYDNEWGYSNRVLDLVGHMALVGS 378
S SF+K+VSWYDNEWGYS RVLDL+ HMALV +
Sbjct: 385 SKSFMKLVSWYDNEWGYSTRVLDLIEHMALVAA 417
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,491,212
Number of Sequences: 1393205
Number of extensions: 10759241
Number of successful extensions: 33408
Number of sequences better than 10.0: 1504
Number of HSP's better than 10.0 without gapping: 31493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33108
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
