KMC003500A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC003500A_C01 KMC003500A_c01
AAAAAACAAAACAATAAATCTATTTTCTGTGCAAATATTTTTTTGAAATGAAAACAGCCT
AATTTATTATCCTTCTTTCCTATCCTGTGACCTTTTCCCACAGCACTGAAGGATAAAATA
CTTTTATAACTAACATTAAATTACATTATTTGTGTACATCTCTTCAGTAATACAACCAAA
TGTACAGCATGGTCTTCCAGGCTCCTCTGGTATGAATCCAGTTTATTGTAAAAATCAAAC
CTGAGTATAGTAAAATGATTCAGGCATATTCCATGTCTGCGACATCTTTTATGTTATTTG
AGATATCCTTCCACAAGTTGAGTGTCTTGAGAGCCTTTCCTGATGGTTGTGTTTCACGCG
CCATAGACACCCCTTCAGCTAGGTTGCTTACATAGCCACTAACCAAGAGAGCTGCTGCTG
CATTGAGAACCAAAGCATCTGCAATAGGCCCCAATCTCCCCACCTAGAACACGCTTCAGA
ATCGCTGCATTGTATTCTGGGTCACCACCTTTTAAGCTTTCAAGATTGCACCGCGGAATG
CCAAAATCCAAGGGATCGAATGAGAACCTATCAATCTTTTCTGGAGTAACATCAAGCACT
AGACCAGGTCCAAGAGGACTTATTTCATCCAAACCTTCAGAGTGGACAACTAAAG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003500A_C01 KMC003500A_c01
(655 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197300.1| anthranilate phosphoribosyltransferase, chlorop... 112 3e-39
gb|AAB02913.1| phosphoribosylanthranilate transferase gi|2839422... 112 3e-39
gb|AAM19104.1|AC104427_2 Putative phosphoribosylanthranilate tra... 108 8e-37
gb|AAO72571.1| putative phosphoribosylanthranilate transferase [... 108 8e-37
gb|ZP_00050126.1| hypothetical protein [Magnetospirillum magneto... 65 3e-14
>ref|NP_197300.1| anthranilate phosphoribosyltransferase, chloroplast precursor
(sp|Q02166); protein id: At5g17990.1, supported by cDNA:
gi_15450851, supported by cDNA: gi_20259899 [Arabidopsis
thaliana] gi|401213|sp|Q02166|TRPD_ARATH Anthranilate
phosphoribosyltransferase, chloroplast precursor
gi|166792|gb|AAA32835.1| phosphoribosylanthranilate
transferase gi|9757891|dbj|BAB08398.1| anthranilate
phosphoribosyltransferase, chloroplast precursor
[Arabidopsis thaliana] gi|15450852|gb|AAK96697.1|
anthranilate phosphoribosyltransferase, chloroplast
precursor [Arabidopsis thaliana]
gi|20259900|gb|AAM13297.1| anthranilate
phosphoribosyltransferase, chloroplast precursor
[Arabidopsis thaliana] gi|445600|prf||1909347A
phosphoribosylanthranilate transferase
Length = 444
Score = 112 bits (279), Expect(2) = 3e-39
Identities = 53/69 (76%), Positives = 59/69 (84%)
Frame = -3
Query: 653 LVVHSEGLDEISPLGPGLVLDVTPEKIDRFSFDPLDFGIPRCNLESLKGGDPEYNAAILK 474
LVVHS GLDE+SPLG GLV DVTPEKI+ FSFDPLDFGIPRC LE L+GG P+YNA +L+
Sbjct: 320 LVVHSCGLDEMSPLGGGLVYDVTPEKIEEFSFDPLDFGIPRCTLEDLRGGGPDYNADVLR 379
Query: 473 RVLGGEIGA 447
RVL GE GA
Sbjct: 380 RVLSGESGA 388
Score = 72.0 bits (175), Expect(2) = 3e-39
Identities = 37/55 (67%), Positives = 44/55 (79%)
Frame = -1
Query: 460 GRLGPIADALVLNAAAALLVSGYVSNLAEGVSMARETQPSGKALKTLNLWKDISN 296
G G IAD+L+LNAAAALLVS V LAEGV++ARE Q SGKA+KTL+ W +ISN
Sbjct: 384 GESGAIADSLILNAAAALLVSNRVQTLAEGVTVAREVQSSGKAIKTLDSWINISN 438
>gb|AAB02913.1| phosphoribosylanthranilate transferase gi|28394222|gb|AAO42464.1|
phosphorybosyl anthranilate transferase 1 [Arabidopsis
thaliana]
Length = 441
Score = 112 bits (279), Expect(2) = 3e-39
Identities = 53/69 (76%), Positives = 59/69 (84%)
Frame = -3
Query: 653 LVVHSEGLDEISPLGPGLVLDVTPEKIDRFSFDPLDFGIPRCNLESLKGGDPEYNAAILK 474
LVVHS GLDE+SPLG GLV DVTPEKI+ FSFDPLDFGIPRC LE L+GG P+YNA +L+
Sbjct: 317 LVVHSCGLDEMSPLGGGLVYDVTPEKIEEFSFDPLDFGIPRCTLEDLRGGGPDYNADVLR 376
Query: 473 RVLGGEIGA 447
RVL GE GA
Sbjct: 377 RVLSGESGA 385
Score = 72.0 bits (175), Expect(2) = 3e-39
Identities = 37/55 (67%), Positives = 44/55 (79%)
Frame = -1
Query: 460 GRLGPIADALVLNAAAALLVSGYVSNLAEGVSMARETQPSGKALKTLNLWKDISN 296
G G IAD+L+LNAAAALLVS V LAEGV++ARE Q SGKA+KTL+ W +ISN
Sbjct: 381 GESGAIADSLILNAAAALLVSNRVQTLAEGVTVAREVQSSGKAIKTLDSWINISN 435
>gb|AAM19104.1|AC104427_2 Putative phosphoribosylanthranilate transferase [Oryza sativa
(japonica cultivar-group)]
Length = 409
Score = 108 bits (269), Expect(2) = 8e-37
Identities = 49/69 (71%), Positives = 58/69 (84%)
Frame = -3
Query: 653 LVVHSEGLDEISPLGPGLVLDVTPEKIDRFSFDPLDFGIPRCNLESLKGGDPEYNAAILK 474
LVVHS+GLDEISPLGPG +LDVTP KI++ FDPLDFGIPRC LE LKGGDP +NA +L+
Sbjct: 275 LVVHSKGLDEISPLGPGYILDVTPRKIEKMLFDPLDFGIPRCTLEDLKGGDPAFNAKVLQ 334
Query: 473 RVLGGEIGA 447
VL G+ G+
Sbjct: 335 DVLAGQRGS 343
Score = 67.8 bits (164), Expect(2) = 8e-37
Identities = 35/55 (63%), Positives = 44/55 (79%)
Frame = -1
Query: 460 GRLGPIADALVLNAAAALLVSGYVSNLAEGVSMARETQPSGKALKTLNLWKDISN 296
G+ G IADALVLNAAA+LLVSG V+ L +GV++A+ETQ SG+A+ TL W ISN
Sbjct: 339 GQRGSIADALVLNAAASLLVSGKVNTLHDGVALAQETQRSGEAINTLESWIKISN 393
>gb|AAO72571.1| putative phosphoribosylanthranilate transferase [Oryza sativa
(japonica cultivar-group)]
Length = 320
Score = 108 bits (269), Expect(2) = 8e-37
Identities = 49/69 (71%), Positives = 58/69 (84%)
Frame = -3
Query: 653 LVVHSEGLDEISPLGPGLVLDVTPEKIDRFSFDPLDFGIPRCNLESLKGGDPEYNAAILK 474
LVVHS+GLDEISPLGPG +LDVTP KI++ FDPLDFGIPRC LE LKGGDP +NA +L+
Sbjct: 196 LVVHSKGLDEISPLGPGYILDVTPRKIEKMLFDPLDFGIPRCTLEDLKGGDPAFNAKVLQ 255
Query: 473 RVLGGEIGA 447
VL G+ G+
Sbjct: 256 DVLAGQRGS 264
Score = 67.8 bits (164), Expect(2) = 8e-37
Identities = 35/55 (63%), Positives = 44/55 (79%)
Frame = -1
Query: 460 GRLGPIADALVLNAAAALLVSGYVSNLAEGVSMARETQPSGKALKTLNLWKDISN 296
G+ G IADALVLNAAA+LLVSG V+ L +GV++A+ETQ SG+A+ TL W ISN
Sbjct: 260 GQRGSIADALVLNAAASLLVSGKVNTLHDGVALAQETQRSGEAINTLESWIKISN 314
>gb|ZP_00050126.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 241
Score = 65.5 bits (158), Expect(2) = 3e-14
Identities = 31/66 (46%), Positives = 43/66 (64%)
Frame = -3
Query: 641 SEGLDEISPLGPGLVLDVTPEKIDRFSFDPLDFGIPRCNLESLKGGDPEYNAAILKRVLG 462
S+GLDEI+ GP V+ + + RF+ DP + G+P L+ L+GGDPE+NAA L+ VL
Sbjct: 126 SDGLDEITTTGPTAVVALEDGALSRFTIDPREVGLPLVTLDDLRGGDPEHNAAALRAVLE 185
Query: 461 GEIGAY 444
G AY
Sbjct: 186 GTPSAY 191
Score = 34.7 bits (78), Expect(2) = 3e-14
Identities = 21/48 (43%), Positives = 27/48 (55%)
Frame = -1
Query: 439 DALVLNAAAALLVSGYVSNLAEGVSMARETQPSGKALKTLNLWKDISN 296
D VLNA A L+V+ +LAEGV+ A+ SG A TL +SN
Sbjct: 193 DIAVLNAGAGLVVAKAAGSLAEGVARAQAAIDSGAARATLARLVAVSN 240
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 573,374,887
Number of Sequences: 1393205
Number of extensions: 12480850
Number of successful extensions: 27543
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 26741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27529
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
MR059c06_f |
BP080511 |
1 |
374 |
| 2 |
MF042b03_f |
BP030475 |
1 |
430 |
| 3 |
GNf046e11 |
BP070770 |
2 |
278 |
| 4 |
MF092g01_f |
BP033133 |
4 |
347 |
| 5 |
SPD034c05_f |
BP046685 |
32 |
545 |
| 6 |
MF005h04_f |
BP028515 |
36 |
347 |
| 7 |
MR084d07_f |
BP082464 |
110 |
200 |
| 8 |
MPD013d03_f |
AV770883 |
111 |
362 |
| 9 |
MFB056h12_f |
BP038095 |
111 |
494 |
| 10 |
MWM199a11_f |
AV767782 |
111 |
579 |
| 11 |
MF032c02_f |
BP029960 |
112 |
672 |
| 12 |
MF041f09_f |
BP030457 |
115 |
607 |
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Lotus japonicus
Kazusa DNA Research Institute