Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003499A_C01 KMC003499A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62602.1| unknown [Arabidopsis thaliana] 144 8e-34
ref|NP_565103.1| expressed protein; protein id: At1g75180.1, sup... 144 8e-34
gb|AAL67072.1| unknown protein [Arabidopsis thaliana] 144 8e-34
ref|NP_173373.2| unknown protein; protein id: At1g19400.1, suppo... 130 1e-29
gb|AAM65896.1| unknown [Arabidopsis thaliana] 110 1e-23
>gb|AAM62602.1| unknown [Arabidopsis thaliana]
Length = 315
Score = 144 bits (363), Expect = 8e-34
Identities = 73/119 (61%), Positives = 89/119 (74%), Gaps = 1/119 (0%)
Frame = -2
Query: 571 TPIILTKTLQLSSQKRHARKGVLDAIPEHEATEDGRDPSSELALQAPDYLYNKHEDE-DY 395
TPIILTKTLQL +K+H R LD+IPE+E E + SSEL Q +Y K E E ++
Sbjct: 195 TPIILTKTLQLGFRKKHGRVTALDSIPEYETDEPHKGNSSELDYQVTEYGSYKQEYEGEH 254
Query: 394 NTLYSRTAYAEGEDGELSWFNAGVRVGVGIGLSVCLGIGIGVGVLVKTYQGTTRQFRRR 218
+ +Y YA+GEDGE+SWFNAGVRVGVGIGL VC+G+GIGVG+LV+TYQ TTR FRRR
Sbjct: 255 SDMYWNREYADGEDGEMSWFNAGVRVGVGIGLGVCVGLGIGVGLLVRTYQSTTRNFRRR 313
>ref|NP_565103.1| expressed protein; protein id: At1g75180.1, supported by cDNA:
148308., supported by cDNA: gi_18389257 [Arabidopsis
thaliana] gi|25406419|pir||A96782 unknown protein
F22H5.9 [imported] - Arabidopsis thaliana
gi|10092268|gb|AAG12681.1|AC025814_5 unknown protein;
48213-49974 [Arabidopsis thaliana]
gi|23297334|gb|AAN12944.1| unknown protein [Arabidopsis
thaliana]
Length = 315
Score = 144 bits (363), Expect = 8e-34
Identities = 73/119 (61%), Positives = 89/119 (74%), Gaps = 1/119 (0%)
Frame = -2
Query: 571 TPIILTKTLQLSSQKRHARKGVLDAIPEHEATEDGRDPSSELALQAPDYLYNKHEDE-DY 395
TPIILTKTLQL +K+H R LD+IPE+E E + SSEL Q +Y K E E ++
Sbjct: 195 TPIILTKTLQLGFRKKHGRVTALDSIPEYETDEPHKGNSSELDYQVTEYGSYKQEYEGEH 254
Query: 394 NTLYSRTAYAEGEDGELSWFNAGVRVGVGIGLSVCLGIGIGVGVLVKTYQGTTRQFRRR 218
+ +Y YA+GEDGE+SWFNAGVRVGVGIGL VC+G+GIGVG+LV+TYQ TTR FRRR
Sbjct: 255 SDMYWNREYADGEDGEMSWFNAGVRVGVGIGLGVCVGLGIGVGLLVRTYQSTTRNFRRR 313
>gb|AAL67072.1| unknown protein [Arabidopsis thaliana]
Length = 315
Score = 144 bits (363), Expect = 8e-34
Identities = 73/119 (61%), Positives = 89/119 (74%), Gaps = 1/119 (0%)
Frame = -2
Query: 571 TPIILTKTLQLSSQKRHARKGVLDAIPEHEATEDGRDPSSELALQAPDYLYNKHEDE-DY 395
TPIILTKTLQL +K+H R LD+IPE+E E + SSEL Q +Y K E E ++
Sbjct: 195 TPIILTKTLQLGFRKKHGRVTALDSIPEYETDEPHKGNSSELDYQVTEYGSYKQEYEGEH 254
Query: 394 NTLYSRTAYAEGEDGELSWFNAGVRVGVGIGLSVCLGIGIGVGVLVKTYQGTTRQFRRR 218
+ +Y YA+GEDGE+SWFNAGVRVGVGIGL VC+G+GIGVG+LV+TYQ TTR FRRR
Sbjct: 255 SDMYWNREYADGEDGEMSWFNAGVRVGVGIGLGVCVGLGIGVGLLVRTYQSTTRNFRRR 313
>ref|NP_173373.2| unknown protein; protein id: At1g19400.1, supported by cDNA:
gi_18176222, supported by cDNA: gi_20465770 [Arabidopsis
thaliana] gi|18176223|gb|AAL60006.1| unknown protein
[Arabidopsis thaliana] gi|20465771|gb|AAM20374.1|
unknown protein [Arabidopsis thaliana]
Length = 303
Score = 130 bits (327), Expect = 1e-29
Identities = 70/118 (59%), Positives = 86/118 (72%)
Frame = -2
Query: 571 TPIILTKTLQLSSQKRHARKGVLDAIPEHEATEDGRDPSSELALQAPDYLYNKHEDEDYN 392
TPIILTKTLQL +K+ +R+ LDAIPE+E E +D S L LQA Y +++E
Sbjct: 188 TPIILTKTLQLGLKKKQSRRMALDAIPEYETAEPQKDTSYALDLQATTE-YGNYKEEYEG 246
Query: 391 TLYSRTAYAEGEDGELSWFNAGVRVGVGIGLSVCLGIGIGVGVLVKTYQGTTRQFRRR 218
+Y R+ E DGE+SWFNAGVRVGVGIGL VC+G+GIGVG+LV+TYQ TTR FRRR
Sbjct: 247 DMYWRS---ECIDGEMSWFNAGVRVGVGIGLGVCVGLGIGVGLLVRTYQSTTRTFRRR 301
>gb|AAM65896.1| unknown [Arabidopsis thaliana]
Length = 327
Score = 110 bits (276), Expect = 1e-23
Identities = 63/126 (50%), Positives = 82/126 (65%), Gaps = 9/126 (7%)
Frame = -2
Query: 568 PIILTKTLQLSSQKRHARKGVLDAIPEHEATEDGRDPSS---ELALQAPDYLYNKHEDE- 401
P+ILTKT+Q S +++ AR LDAIPE E +D + ELA Q+ + DE
Sbjct: 200 PVILTKTIQASPRRKVARHVTLDAIPEDEEVGKEQDIGTIGDELARQSKVQMMESEVDEY 259
Query: 400 -DYNTLYSRTAYAEG----EDGELSWFNAGVRVGVGIGLSVCLGIGIGVGVLVKTYQGTT 236
D + ++ Y EG EDG+LSWFNAGVRVGVGIGL +CLG+GIGVG+L+++YQ TT
Sbjct: 260 DDSDMKMAQRYYPEGMYVDEDGQLSWFNAGVRVGVGIGLGMCLGVGIGVGLLMRSYQATT 319
Query: 235 RQFRRR 218
RRR
Sbjct: 320 SNLRRR 325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,241,731
Number of Sequences: 1393205
Number of extensions: 10754405
Number of successful extensions: 85245
Number of sequences better than 10.0: 288
Number of HSP's better than 10.0 without gapping: 42116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73408
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
