Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003498A_C01 KMC003498A_c01
(451 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567069.1| putative protein; protein id: At3g58530.1, supp... 117 3e-26
gb|AAK96751.1| putative protein [Arabidopsis thaliana] gi|179787... 117 3e-26
pir||T45673 hypothetical protein F14P22.120 - Arabidopsis thalia... 117 3e-26
ref|XP_217519.1| similar to hypothetical protein MGC15482 [Homo ... 46 9e-05
ref|XP_132975.2| similar to hypothetical protein MGC15482 [Homo ... 45 2e-04
>ref|NP_567069.1| putative protein; protein id: At3g58530.1, supported by cDNA:
35534., supported by cDNA: gi_15450959, supported by
cDNA: gi_17978710 [Arabidopsis thaliana]
gi|21593045|gb|AAM64994.1| unknown [Arabidopsis
thaliana]
Length = 353
Score = 117 bits (293), Expect = 3e-26
Identities = 55/72 (76%), Positives = 62/72 (85%)
Frame = -1
Query: 448 GVIAVAQGCTSLEFLSLFGIVGVTDKCLEALSKSCSDKITTLDVNGCIGIKKRSREELLQ 269
GV +A CTSLEFLSLFGIVGVTD+CLE LS++CS +TTLDVNGC GIK+RSREELLQ
Sbjct: 282 GVNTIANSCTSLEFLSLFGIVGVTDRCLETLSQTCSTTLTTLDVNGCTGIKRRSREELLQ 341
Query: 268 LFPYLKCFKVHS 233
+FP L CFKVHS
Sbjct: 342 MFPRLTCFKVHS 353
Score = 37.7 bits (86), Expect = 0.032
Identities = 20/70 (28%), Positives = 38/70 (53%)
Frame = -1
Query: 448 GVIAVAQGCTSLEFLSLFGIVGVTDKCLEALSKSCSDKITTLDVNGCIGIKKRSREELLQ 269
G+ A+ C L+ S++ V VTD + L K+C IT L+++GC + +S + + +
Sbjct: 128 GIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCR-HITDLNLSGCKSLTDKSMQLVAE 186
Query: 268 LFPYLKCFKV 239
+P L+ +
Sbjct: 187 SYPDLESLNI 196
>gb|AAK96751.1| putative protein [Arabidopsis thaliana] gi|17978711|gb|AAL47349.1|
putative protein [Arabidopsis thaliana]
Length = 353
Score = 117 bits (293), Expect = 3e-26
Identities = 55/72 (76%), Positives = 62/72 (85%)
Frame = -1
Query: 448 GVIAVAQGCTSLEFLSLFGIVGVTDKCLEALSKSCSDKITTLDVNGCIGIKKRSREELLQ 269
GV +A CTSLEFLSLFGIVGVTD+CLE LS++CS +TTLDVNGC GIK+RSREELLQ
Sbjct: 282 GVNTIANSCTSLEFLSLFGIVGVTDRCLETLSQTCSTTLTTLDVNGCTGIKRRSREELLQ 341
Query: 268 LFPYLKCFKVHS 233
+FP L CFKVHS
Sbjct: 342 MFPRLTCFKVHS 353
Score = 37.7 bits (86), Expect = 0.032
Identities = 20/70 (28%), Positives = 38/70 (53%)
Frame = -1
Query: 448 GVIAVAQGCTSLEFLSLFGIVGVTDKCLEALSKSCSDKITTLDVNGCIGIKKRSREELLQ 269
G+ A+ C L+ S++ V VTD + L K+C IT L+++GC + +S + + +
Sbjct: 128 GIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCR-HITDLNLSGCKSLTDKSMQLVAE 186
Query: 268 LFPYLKCFKV 239
+P L+ +
Sbjct: 187 SYPDLESLNI 196
Score = 30.0 bits (66), Expect = 6.7
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = -1
Query: 451 EGVIAVAQGCTSLEFLSLFGIVGVTDKCLEALS 353
+G++ V Q C SL+ L+L+ + G TDK +S
Sbjct: 205 DGLLQVLQKCFSLQTLNLYALSGFTDKAYMKIS 237
>pir||T45673 hypothetical protein F14P22.120 - Arabidopsis thaliana
gi|6735370|emb|CAB68191.1| putative protein [Arabidopsis
thaliana]
Length = 314
Score = 117 bits (293), Expect = 3e-26
Identities = 55/72 (76%), Positives = 62/72 (85%)
Frame = -1
Query: 448 GVIAVAQGCTSLEFLSLFGIVGVTDKCLEALSKSCSDKITTLDVNGCIGIKKRSREELLQ 269
GV +A CTSLEFLSLFGIVGVTD+CLE LS++CS +TTLDVNGC GIK+RSREELLQ
Sbjct: 243 GVNTIANSCTSLEFLSLFGIVGVTDRCLETLSQTCSTTLTTLDVNGCTGIKRRSREELLQ 302
Query: 268 LFPYLKCFKVHS 233
+FP L CFKVHS
Sbjct: 303 MFPRLTCFKVHS 314
Score = 32.0 bits (71), Expect = 1.8
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -1
Query: 448 GVIAVAQGCTSLEFLSLFGIVGVTDKCLEALSKSCSDKITTLDVNGC 308
G+ A+ C L+ S++ V VTD + L K+C IT L+++GC
Sbjct: 113 GIEAITSICPKLKVFSIYWNVRVTDAGIRNLVKNCR-HITDLNLSGC 158
>ref|XP_217519.1| similar to hypothetical protein MGC15482 [Homo sapiens] [Rattus
norvegicus]
Length = 258
Score = 46.2 bits (108), Expect = 9e-05
Identities = 25/68 (36%), Positives = 39/68 (56%)
Frame = -1
Query: 451 EGVIAVAQGCTSLEFLSLFGIVGVTDKCLEALSKSCSDKITTLDVNGCIGIKKRSREELL 272
EG+ AVA C+ L +SL G VTD+ + AL+ +C + +D+ GC+ I S L
Sbjct: 105 EGIKAVASSCSDLHEISLKGCCSVTDEGVLALALNC-QLLKIIDLGGCLSITDESLHALG 163
Query: 271 QLFPYLKC 248
+ P+L+C
Sbjct: 164 KNCPFLQC 171
>ref|XP_132975.2| similar to hypothetical protein MGC15482 [Homo sapiens] [Mus
musculus]
Length = 215
Score = 45.1 bits (105), Expect = 2e-04
Identities = 25/71 (35%), Positives = 40/71 (56%)
Frame = -1
Query: 451 EGVIAVAQGCTSLEFLSLFGIVGVTDKCLEALSKSCSDKITTLDVNGCIGIKKRSREELL 272
EG+ AVA C+ L + L G VTD+ + AL+ +C + +D+ GC+GI S L
Sbjct: 62 EGIKAVASSCSDLHEIYLKGCCSVTDEGVLALALNC-HLLKIIDLGGCLGITDVSLHALG 120
Query: 271 QLFPYLKCFKV 239
+ P+L+C +
Sbjct: 121 KNCPFLQCVDI 131
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 331,025,691
Number of Sequences: 1393205
Number of extensions: 5977860
Number of successful extensions: 12272
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 11939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12262
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
