Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003495A_C01 KMC003495A_c01
(691 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177561.1| putative glycerophosphodiester phosphodiesteras... 145 7e-34
dbj|BAB92381.1| putative glycerophosphoryl diester phosphodieste... 137 1e-31
ref|NP_196420.1| glycerophosphodiester phosphodiesterase - like ... 125 7e-28
ref|NP_484319.1| glycerophosphoryl diester phosphodiesterase [No... 57 2e-07
gb|AAB49412.1| glycerophosphodiester phosphodiesterase gi|151321... 54 3e-06
>ref|NP_177561.1| putative glycerophosphodiester phosphodiesterase; protein id:
At1g74210.1, supported by cDNA: 24182., supported by
cDNA: gi_17381161 [Arabidopsis thaliana]
gi|25406323|pir||D96770 hypothetical protein F1O17.12
[imported] - Arabidopsis thaliana
gi|12324904|gb|AAG52406.1|AC020579_8 putative
glycerophosphodiester phosphodiesterase; 42559-40170
[Arabidopsis thaliana] gi|17381162|gb|AAL36393.1|
putative glycerophosphodiester phosphodiesterase
[Arabidopsis thaliana] gi|21592460|gb|AAM64411.1|
putative glycerophosphodiester phosphodiesterase
[Arabidopsis thaliana] gi|23296874|gb|AAN13192.1|
putative glycerophosphodiester phosphodiesterase
[Arabidopsis thaliana]
Length = 392
Score = 145 bits (365), Expect = 7e-34
Identities = 67/89 (75%), Positives = 76/89 (85%), Gaps = 3/89 (3%)
Frame = -3
Query: 689 TDLVARAHAHNLQVHPYTYRNENKYLHFNFSQDPYVEYDYWINKVGVDGLFTDFTGSLHN 510
TDLV RAHAHNLQVHPYTYRNE+++LH+NFSQDPY EYDYWIN++GVDGLFTDFTGSLHN
Sbjct: 301 TDLVKRAHAHNLQVHPYTYRNEHEFLHYNFSQDPYKEYDYWINEIGVDGLFTDFTGSLHN 360
Query: 509 FQEWTS---YKSQDASKLLHKIAQLVSPY 432
FQEWTS S+ +LL +IA LV PY
Sbjct: 361 FQEWTSPLPDTSKSPRQLLSQIASLVLPY 389
>dbj|BAB92381.1| putative glycerophosphoryl diester phosphodiesterase [Oryza sativa
(japonica cultivar-group)]
Length = 391
Score = 137 bits (345), Expect = 1e-31
Identities = 63/89 (70%), Positives = 74/89 (82%), Gaps = 2/89 (2%)
Frame = -3
Query: 689 TDLVARAHAHNLQVHPYTYRNENKYLHFNFSQDPYVEYDYWINKVGVDGLFTDFTGSLHN 510
TDLVARAHAHNLQVHPYTYRNEN++LH NF QDPY EYD+WIN +GVDGLFTDFTGSLH
Sbjct: 301 TDLVARAHAHNLQVHPYTYRNENQFLHLNFHQDPYAEYDFWINSMGVDGLFTDFTGSLHR 360
Query: 509 FQEWTS--YKSQDASKLLHKIAQLVSPYK 429
+QE + K + A+ LL KIAQ++S Y+
Sbjct: 361 YQELVAPHAKDETANSLLVKIAQMISQYE 389
>ref|NP_196420.1| glycerophosphodiester phosphodiesterase - like protein; protein id:
At5g08030.1 [Arabidopsis thaliana]
gi|11357308|pir||T45628 glycerophosphodiester
phosphodiesterase-like protein - Arabidopsis thaliana
gi|6562317|emb|CAB62615.1| glycerophosphodiester
phosphodiesterase-like protein [Arabidopsis thaliana]
Length = 372
Score = 125 bits (313), Expect = 7e-28
Identities = 53/66 (80%), Positives = 61/66 (92%)
Frame = -3
Query: 689 TDLVARAHAHNLQVHPYTYRNENKYLHFNFSQDPYVEYDYWINKVGVDGLFTDFTGSLHN 510
TDLVARAH+ NLQVHPYTYRNEN++LH F+QDPY+EYDYW+NK+GVDGLFTDFTGSLHN
Sbjct: 301 TDLVARAHSRNLQVHPYTYRNENQFLHLEFNQDPYLEYDYWLNKIGVDGLFTDFTGSLHN 360
Query: 509 FQEWTS 492
+QE S
Sbjct: 361 YQELKS 366
>ref|NP_484319.1| glycerophosphoryl diester phosphodiesterase [Nostoc sp. PCC 7120]
gi|25530449|pir||AC1841 glycerophosphoryl diester
phosphodiesterase [imported] - Nostoc sp. (strain PCC
7120) gi|17135253|dbj|BAB77799.1| glycerophosphoryl
diester phosphodiesterase [Nostoc sp. PCC 7120]
Length = 1027
Score = 57.0 bits (136), Expect = 2e-07
Identities = 28/54 (51%), Positives = 37/54 (67%)
Frame = -3
Query: 689 TDLVARAHAHNLQVHPYTYRNENKYLHFNFSQDPYVEYDYWINKVGVDGLFTDF 528
T LV AH LQVHPYT+R+E +YL N+ +P +EY + ++GVD LFTDF
Sbjct: 490 TTLVQDAHNVGLQVHPYTFRDEERYLAANYQGNPELEYQQ-LFQLGVDALFTDF 542
>gb|AAB49412.1| glycerophosphodiester phosphodiesterase gi|1513213|gb|AAB51468.1|
38 kDa lipoprotein Gpd [Borrelia hermsii]
Length = 340
Score = 53.5 bits (127), Expect = 3e-06
Identities = 27/61 (44%), Positives = 38/61 (62%)
Frame = -3
Query: 689 TDLVARAHAHNLQVHPYTYRNENKYLHFNFSQDPYVEYDYWINKVGVDGLFTDFTGSLHN 510
TDL + AH HN++VHPYT+R + ++ +D D NK VDG+FTDFT ++ N
Sbjct: 277 TDLTSLAHKHNMEVHPYTFRIDALP---SYVKDADELLDLLFNKAKVDGIFTDFTDTVVN 333
Query: 509 F 507
F
Sbjct: 334 F 334
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 586,638,205
Number of Sequences: 1393205
Number of extensions: 11758595
Number of successful extensions: 24444
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 23712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24401
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
