Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003492A_C01 KMC003492A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86217.1| putative myb-related protein [Oryza sativa (japo... 43 0.002
gb|AAN28273.1| myb-like transcription factor 1 [Gossypioides kir... 40 0.011
gb|AAN28270.1| myb-like transcription factor 1 [Gossypium hirsutum] 40 0.019
gb|AAN28271.1| myb-like transcription factor 1 [Gossypium raimon... 40 0.019
gb|AAN28272.1| myb-like transcription factor 1 [Gossypium herbac... 39 0.033
>dbj|BAB86217.1| putative myb-related protein [Oryza sativa (japonica
cultivar-group)] gi|20146514|dbj|BAB89293.1| putative
myb-related protein [Oryza sativa (japonica
cultivar-group)] gi|20804748|dbj|BAB92433.1| putative
myb-related protein [Oryza sativa (japonica
cultivar-group)]
Length = 287
Score = 43.1 bits (100), Expect = 0.002
Identities = 28/100 (28%), Positives = 43/100 (43%)
Frame = -3
Query: 495 PHHHQQLNLELSIGLPSHQYQNQLASSSSVKLKHEQQEEPPRINLYQQWCGNVSQGACVC 316
P + L+L+LS+ LPS + A+SS+ +H ++ I C+C
Sbjct: 204 PDLNLDLDLDLSMSLPSSPPKTPAAASSTTASRHHHHQQQKTI--------------CLC 249
Query: 315 YGLGFQTNQACCCRAMATAAATTVTKAANEDDIFRFYRPM 196
Y LG + C C+A A + A FRF RP+
Sbjct: 250 YHLGVRNGDVCSCKAAAPSPA--------GPRAFRFLRPL 281
>gb|AAN28273.1| myb-like transcription factor 1 [Gossypioides kirkii]
Length = 263
Score = 40.4 bits (93), Expect = 0.011
Identities = 26/73 (35%), Positives = 39/73 (52%), Gaps = 2/73 (2%)
Frame = -3
Query: 495 PHHHQQLNLELSIGLPSHQYQNQLASSSSVKLKHEQQEEPPRINLYQQWCGN--VSQGAC 322
P + Q LNLELSIG+ S A SS V + + +P N Q+ V++ C
Sbjct: 192 PCNGQDLNLELSIGIVS-------ADSSRVSSANSAESKPKLDNNNFQFLEQAMVAKAVC 244
Query: 321 VCYGLGFQTNQAC 283
+C+ LGF+T++ C
Sbjct: 245 LCWQLGFRTSEIC 257
>gb|AAN28270.1| myb-like transcription factor 1 [Gossypium hirsutum]
Length = 294
Score = 39.7 bits (91), Expect = 0.019
Identities = 26/73 (35%), Positives = 38/73 (51%), Gaps = 2/73 (2%)
Frame = -3
Query: 495 PHHHQQLNLELSIGLPSHQYQNQLASSSSVKLKHEQQEEPPRINLYQQWCGN--VSQGAC 322
P + Q LNLELSIG+ S A SS V + + +P N Q+ V++ C
Sbjct: 209 PSNGQDLNLELSIGIVS-------ADSSRVSSANSAESKPKVDNNNFQFLEQAMVAKAVC 261
Query: 321 VCYGLGFQTNQAC 283
+C+ LGF T++ C
Sbjct: 262 LCWQLGFGTSEIC 274
>gb|AAN28271.1| myb-like transcription factor 1 [Gossypium raimondii]
Length = 268
Score = 39.7 bits (91), Expect = 0.019
Identities = 26/73 (35%), Positives = 38/73 (51%), Gaps = 2/73 (2%)
Frame = -3
Query: 495 PHHHQQLNLELSIGLPSHQYQNQLASSSSVKLKHEQQEEPPRINLYQQWCGN--VSQGAC 322
P + Q LNLELSIG+ S A SS V + + +P N Q+ V++ C
Sbjct: 195 PSNGQDLNLELSIGIVS-------ADSSRVSSANSAESKPKVDNNNFQFLEQAMVAKAVC 247
Query: 321 VCYGLGFQTNQAC 283
+C+ LGF T++ C
Sbjct: 248 LCWQLGFGTSEIC 260
>gb|AAN28272.1| myb-like transcription factor 1 [Gossypium herbaceum]
Length = 265
Score = 38.9 bits (89), Expect = 0.033
Identities = 25/73 (34%), Positives = 38/73 (51%), Gaps = 2/73 (2%)
Frame = -3
Query: 495 PHHHQQLNLELSIGLPSHQYQNQLASSSSVKLKHEQQEEPPRINLYQQWCGN--VSQGAC 322
P + Q +NLELSIG+ S A SS V + + +P N Q+ V++ C
Sbjct: 192 PSNGQDINLELSIGIVS-------ADSSRVSSANSAESKPKVDNNNFQFLEQAMVAKAVC 244
Query: 321 VCYGLGFQTNQAC 283
+C+ LGF T++ C
Sbjct: 245 LCWQLGFGTSEIC 257
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,521,615
Number of Sequences: 1393205
Number of extensions: 7676953
Number of successful extensions: 18878
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18852
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
