KMC003489A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC003489A_C01 KMC003489A_c01
atgggtcgggcccccctcgaggAGGGCGAGGACTTTGATCTGGAGGGAGGCATAGGGGCG
GAAGGGGGGGACATGATGGTTTGTCAGGTACAACAGTCAAAGTACGCCAGGGTCCCTATA
AAGGTGATCGTGGGCGTGTTATAGAGGTTAAAGGCGCAATGGTTCGGGTTGAATTACAAT
CCCAAATGAAGGTTGTAACAGTTGATCGCAACCATATATCTGACAATGTGGCTGTAACCC
CAGTACCGTGATACAACTCGATATGGGATGGGAAGTGAAACCCCAATGCATCCATCTCGA
ACTCCCTTACATCCATATACGACCCCTATGAGAGATCCTGGAGCAACACCTATTCATGAT
GGAATGAGGACGCCAATGCGTGACCGAGCATGGAATCCTTATACACCAATGAGTCCTCCA
AGGGATAACTGGGAAGATGGAAATCCGGGCTCTTGGGGAGCCAGTCCACAGTACCAGCCA
GGAAGTCCTCCTTCCCGGCCATATGAAGCCCCAACTCCT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003489A_C01 KMC003489A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192575.1| putative protein; protein id: At4g08350.1 [Arab... 196 9e-65
ref|NP_180968.1| putative transcription elongation factor; prote... 145 3e-48
ref|NP_571748.1| transcription elongation regulator foggy [Danio... 66 2e-20
dbj|BAA24075.1| DSIF p160 [Homo sapiens] 64 3e-19
ref|NP_003160.2| suppressor of Ty 5 homolog (S. cerevisiae); sup... 64 3e-19
>ref|NP_192575.1| putative protein; protein id: At4g08350.1 [Arabidopsis thaliana]
gi|7487496|pir||T14189 hypothetical protein T28D5.40 -
Arabidopsis thaliana gi|5731756|emb|CAB52557.1| putative
protein [Arabidopsis thaliana] gi|7267476|emb|CAB77960.1|
putative protein [Arabidopsis thaliana]
Length = 1054
Score = 196 bits (497), Expect(2) = 9e-65
Identities = 91/108 (84%), Positives = 93/108 (85%), Gaps = 1/108 (0%)
Frame = +1
Query: 199 QLIATIYLTMWL*PQYR-DTTRYGMGSETPMHPSRTPLHPYTTPMRDPGATPIHDGMRTP 375
QLI Y M Q+R DT+RY MGSETPMHPSRTPLHPY TPMRD GATPIHDGMRTP
Sbjct: 765 QLIGVQYQIMLR--QHRLDTSRYSMGSETPMHPSRTPLHPYMTPMRDSGATPIHDGMRTP 822
Query: 376 MRDRAWNPYTPMSPPRDNWEDGNPGSWGASPQYQPGSPPSRPYEAPTP 519
MRDRAWNPYTPMSPPRDNWEDGNPGSWG SPQYQPGSPPSR YEAPTP
Sbjct: 823 MRDRAWNPYTPMSPPRDNWEDGNPGSWGTSPQYQPGSPPSRAYEAPTP 870
Score = 72.8 bits (177), Expect(2) = 9e-65
Identities = 41/62 (66%), Positives = 46/62 (74%), Gaps = 1/62 (1%)
Frame = +3
Query: 18 RGGRGL*SGGRHRGGRG-GHDGLSGTTVKVRQGPYKGDRGRVIEVKGAMVRVELQSQMKV 194
RGG SGGRH GGRG G D L GTTVK+R GP+KG RG V+EVKG VRVEL +MK+
Sbjct: 680 RGGGYNNSGGRHGGGRGRGDDSLLGTTVKIRLGPFKGYRGPVVEVKGNSVRVEL--EMKI 737
Query: 195 VT 200
VT
Sbjct: 738 VT 739
>ref|NP_180968.1| putative transcription elongation factor; protein id: At2g34210.1
[Arabidopsis thaliana] gi|7485474|pir||T02309 probable
transcription elongation factor [imported] - Arabidopsis
thaliana gi|3337352|gb|AAC27397.1| putative
transcription elongation factor [Arabidopsis thaliana]
Length = 990
Score = 145 bits (366), Expect(2) = 3e-48
Identities = 64/81 (79%), Positives = 68/81 (83%)
Frame = +1
Query: 253 TTRYGMGSETPMHPSRTPLHPYTTPMRDPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNW 432
T +Y MGS+TPMHPSRTPLHP TPMR GATPIHDGMRTPMR RAWNPY PMSPPRDNW
Sbjct: 742 TPQYNMGSQTPMHPSRTPLHPCMTPMRHSGATPIHDGMRTPMRGRAWNPYMPMSPPRDNW 801
Query: 433 EDGNPGSWGASPQYQPGSPPS 495
EDGNPGSWG SP Y+ +P S
Sbjct: 802 EDGNPGSWGTSP-YEAATPGS 821
Score = 67.8 bits (164), Expect(2) = 3e-48
Identities = 41/77 (53%), Positives = 52/77 (67%), Gaps = 9/77 (11%)
Frame = +3
Query: 39 SGGRHRGGRG--GHDGLSGTTVKVRQGPYKGDRGRVIEVKGAMVRVELQSQMKVVT---- 200
+GGRH+GGRG G D L GT VK+R GP+KG GR++EVK +VRVEL++ K+VT
Sbjct: 669 AGGRHQGGRGRRGDDHLVGTYVKIRLGPFKGYSGRLVEVKDKLVRVELEA--KIVTGKLH 726
Query: 201 VDRNHIS---DNVAVTP 242
+R IS DNV TP
Sbjct: 727 FERKAISDMTDNVVATP 743
>ref|NP_571748.1| transcription elongation regulator foggy [Danio rerio]
gi|11527858|gb|AAG37030.1| transcription elongation
regulator FOGGY [Danio rerio]
Length = 1084
Score = 65.9 bits (159), Expect(2) = 2e-20
Identities = 41/100 (41%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Frame = +1
Query: 238 PQYRDTTR-YGMGSETPMHPSRTPLHPYTTPMRDPGATPIHDGMRTPMRDRAWNPYTPMS 414
P Y T YG GS TPM+ S+TPLH + TP+HDG RTP + AW+P P +
Sbjct: 767 PMYGSQTPIYGTGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNT 826
Query: 415 P--PRDNWEDGNPGSWGASPQYQPGSP-PSRP--YEAPTP 519
P P D +E SPQ G+P P P E P+P
Sbjct: 827 PSRPDDEYEFAYDDEPSPSPQGYGGTPNPQTPGYPEVPSP 866
Score = 54.7 bits (130), Expect(2) = 2e-20
Identities = 30/73 (41%), Positives = 40/73 (54%)
Frame = +3
Query: 3 GSGPPRGGRGL*SGGRHRGGRGGHDGLSGTTVKVRQGPYKGDRGRVIEVKGAMVRVELQS 182
G P RGG G GG RG + L G TV++ QGPYKG G V + + RVEL S
Sbjct: 677 GGQPQRGGGGGGGGGMGRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDATESTARVELHS 736
Query: 183 QMKVVTVDRNHIS 221
+ ++VDR ++
Sbjct: 737 TCQTISVDRQRLT 749
>dbj|BAA24075.1| DSIF p160 [Homo sapiens]
Length = 1087
Score = 64.3 bits (155), Expect(2) = 3e-19
Identities = 40/104 (38%), Positives = 52/104 (49%), Gaps = 12/104 (11%)
Frame = +1
Query: 238 PQY-RDTTRYGMGSETPMHPSRTPLHPYTTPMRDPGATPIHDGMRTPMRDRAWNPYTPMS 414
P Y T YG GS TPM+ S+TPL + TP+HDG RTP + AW+P P +
Sbjct: 769 PMYGSQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNT 828
Query: 415 PPR---------DNWEDGNPGSWGASPQYQ-PGSP-PSRPYEAP 513
P R D+ +P ++G +P Q PG P PS P P
Sbjct: 829 PSRAEEEYEYAFDDEPTRSPQAYGGTPNPQTPGYPDPSSPQVNP 872
Score = 52.0 bits (123), Expect(2) = 3e-19
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +3
Query: 3 GSGPPRGGRGL*SGGRHRGGRGGHDG-LSGTTVKVRQGPYKGDRGRVIEVKGAMVRVELQ 179
G G P GG SGG RG RG D L G TV++ QGPYKG G V + + RVEL
Sbjct: 683 GFGSPGGG----SGGMSRG-RGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELH 737
Query: 180 SQMKVVTVDRNHIS 221
S + ++VDR ++
Sbjct: 738 STCQTISVDRQRLT 751
>ref|NP_003160.2| suppressor of Ty 5 homolog (S. cerevisiae); suppressor of Ty
(S.cerevisiae) 5 homolog [Homo sapiens]
gi|2065177|emb|CAA73326.1| Supt5h protein [Homo sapiens]
gi|4104824|gb|AAD02179.1| transcription factor Tat-CT1
[Homo sapiens] gi|18848308|gb|AAH24203.1| suppressor of
Ty 5 homolog (S. cerevisiae) [Homo sapiens]
Length = 1087
Score = 64.3 bits (155), Expect(2) = 3e-19
Identities = 40/104 (38%), Positives = 52/104 (49%), Gaps = 12/104 (11%)
Frame = +1
Query: 238 PQY-RDTTRYGMGSETPMHPSRTPLHPYTTPMRDPGATPIHDGMRTPMRDRAWNPYTPMS 414
P Y T YG GS TPM+ S+TPL + TP+HDG RTP + AW+P P +
Sbjct: 769 PMYGSQTPMYGSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNT 828
Query: 415 PPR---------DNWEDGNPGSWGASPQYQ-PGSP-PSRPYEAP 513
P R D+ +P ++G +P Q PG P PS P P
Sbjct: 829 PSRAEEEYEYAFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNP 872
Score = 52.0 bits (123), Expect(2) = 3e-19
Identities = 33/74 (44%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +3
Query: 3 GSGPPRGGRGL*SGGRHRGGRGGHDG-LSGTTVKVRQGPYKGDRGRVIEVKGAMVRVELQ 179
G G P GG SGG RG RG D L G TV++ QGPYKG G V + + RVEL
Sbjct: 683 GFGSPGGG----SGGMSRG-RGRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELH 737
Query: 180 SQMKVVTVDRNHIS 221
S + ++VDR ++
Sbjct: 738 STCQTISVDRQRLT 751
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 573,081,181
Number of Sequences: 1393205
Number of extensions: 14956735
Number of successful extensions: 92777
Number of sequences better than 10.0: 675
Number of HSP's better than 10.0 without gapping: 60479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85206
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
MPD087d09_f |
AV775717 |
1 |
501 |
| 2 |
GNf045c05 |
BP070672 |
23 |
520 |
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Lotus japonicus
Kazusa DNA Research Institute