Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003481A_C01 KMC003481A_c01
(477 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum] 84 2e-17
pir||T34314 hypothetical protein F59G1.3 - Caenorhabditis elegans 31 7.8
ref|NP_495179.1| Predicted CDS, putative nuclear protein, nemato... 31 7.8
ref|NP_376503.1| 118aa long hypothetical protein [Sulfolobus tok... 31 7.8
gb|AAN87173.1| dopamine D3 receptor [Danio rerio] 31 7.8
>gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum]
Length = 622
Score = 83.6 bits (205), Expect(2) = 2e-17
Identities = 39/54 (72%), Positives = 48/54 (88%)
Frame = -1
Query: 477 TGKVARRKEKEAAAAQREANIVLSKHIGSGAASVNIEDKFKFMMTASNIKGDGA 316
TGKVARRKEKEAAAA +EANI S+H+G GAAS+NIEDK++FM+ ASN +G+GA
Sbjct: 503 TGKVARRKEKEAAAAHKEANIASSRHLGLGAASINIEDKYRFMIAASNSRGEGA 556
Score = 26.2 bits (56), Expect(2) = 2e-17
Identities = 19/51 (37%), Positives = 25/51 (48%)
Frame = -2
Query: 314 QIVPGMINEVSGASHIWLTAIAKAFKVCCFEDAGERASFLLSLRVYVLFHT 162
+IV GMI+EVS I L +++ + LSL YVLFHT
Sbjct: 557 EIVHGMIDEVSDLPPIHLIYRYVVWQILEMDK--------LSLHAYVLFHT 599
>pir||T34314 hypothetical protein F59G1.3 - Caenorhabditis elegans
Length = 1010
Score = 30.8 bits (68), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 426 EANIVLSKHIGSGAASVNIEDKFKFMMTASNIK 328
E I +K IG G V IE ++KF+ TA +K
Sbjct: 120 ETRITETKQIGDGQYEVRIESRYKFLKTAKILK 152
>ref|NP_495179.1| Predicted CDS, putative nuclear protein, nematode specific
[Caenorhabditis elegans] gi|13592438|gb|AAK31534.1|
Hypothetical protein F59G1.8 [Caenorhabditis elegans]
Length = 192
Score = 30.8 bits (68), Expect = 7.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 426 EANIVLSKHIGSGAASVNIEDKFKFMMTASNIK 328
E I +K IG G V IE ++KF+ TA +K
Sbjct: 120 ETRITETKQIGDGQYEVRIESRYKFLKTAKILK 152
>ref|NP_376503.1| 118aa long hypothetical protein [Sulfolobus tokodaii]
gi|15621618|dbj|BAB65612.1| 118aa long hypothetical
protein [Sulfolobus tokodaii]
Length = 118
Score = 30.8 bits (68), Expect = 7.8
Identities = 22/58 (37%), Positives = 28/58 (47%), Gaps = 2/58 (3%)
Frame = +2
Query: 308 LSAAPSPLMFEAVIINLNLSSMLTEAAPD--PMCLDKTIFASLCAAAASFSFLLATFP 475
L A P +F II L +SS L + P C+D TI AS SFL+A+ P
Sbjct: 23 LFATIVPAIFPPAIITLFISSHLVIRSTKFFPSCVDWTILYPFFFTKASMSFLVASSP 80
>gb|AAN87173.1| dopamine D3 receptor [Danio rerio]
Length = 454
Score = 30.8 bits (68), Expect = 7.8
Identities = 13/31 (41%), Positives = 19/31 (60%)
Frame = -1
Query: 207 GKFLVKFASLRIVSHLLDTHCRVCHLGDASY 115
G FL+ + V+H+L+THCR CH+ Y
Sbjct: 390 GVFLICWLPF-FVTHILNTHCRACHIPPEVY 419
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,913,609
Number of Sequences: 1393205
Number of extensions: 7504363
Number of successful extensions: 25604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25592
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
