Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003476A_C01 KMC003476A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD23249.1| squalene monooxygenase 1 [Medicago truncatula] 249 2e-65
emb|CAD23248.1| squalene monooxygenase 2 [Medicago truncatula] 239 2e-62
gb|AAO00687.1| Putative Squalene monooxygenase [Oryza sativa (ja... 224 4e-58
gb|AAO00686.1| Putative Squalene monooxygenase [Oryza sativa (ja... 224 4e-58
sp|O48651|ERG1_PANGI Squalene monooxygenase (Squalene epoxidase)... 224 4e-58
>emb|CAD23249.1| squalene monooxygenase 1 [Medicago truncatula]
Length = 519
Score = 249 bits (636), Expect = 2e-65
Identities = 122/129 (94%), Positives = 125/129 (96%)
Frame = -2
Query: 559 RKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPL 380
RKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNP PL
Sbjct: 391 RKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPCPL 450
Query: 379 SLVLHFFAVAIYGVGRLLLPFPSPKRIWIGLRLITSASGIILPIIKAEGVRQMFFPATVP 200
SLVLHFFAVAIYGVGRLLLPFPSPKR+WIG+RLI SASGIILPIIKAEG+RQMFFPATVP
Sbjct: 451 SLVLHFFAVAIYGVGRLLLPFPSPKRLWIGIRLIASASGIILPIIKAEGIRQMFFPATVP 510
Query: 199 AYYRTPPTA 173
AYYR PP A
Sbjct: 511 AYYRAPPDA 519
>emb|CAD23248.1| squalene monooxygenase 2 [Medicago truncatula]
Length = 526
Score = 239 bits (610), Expect = 2e-62
Identities = 115/127 (90%), Positives = 122/127 (95%)
Frame = -2
Query: 559 RKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPL 380
RKPVASTINTLAGALYKVF ASPD ARKEMRQACFDYLSLGGLFSEGP+SLLSGLNPRPL
Sbjct: 396 RKPVASTINTLAGALYKVFSASPDEARKEMRQACFDYLSLGGLFSEGPISLLSGLNPRPL 455
Query: 379 SLVLHFFAVAIYGVGRLLLPFPSPKRIWIGLRLITSASGIILPIIKAEGVRQMFFPATVP 200
SLVLHFFAVA++GVGRLLLPFPSPKR+WIG RL++ ASGIILPIIKAEG+RQMFFPATVP
Sbjct: 456 SLVLHFFAVAVFGVGRLLLPFPSPKRVWIGARLLSGASGIILPIIKAEGIRQMFFPATVP 515
Query: 199 AYYRTPP 179
AYYR PP
Sbjct: 516 AYYRAPP 522
>gb|AAO00687.1| Putative Squalene monooxygenase [Oryza sativa (japonica
cultivar-group)]
Length = 604
Score = 224 bits (572), Expect = 4e-58
Identities = 109/126 (86%), Positives = 116/126 (91%)
Frame = -2
Query: 559 RKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPL 380
RKPVASTINTLAGALYKVF ASPD AR EMRQACFDYLSLGG+FS GP++LLSGLNPRPL
Sbjct: 401 RKPVASTINTLAGALYKVFSASPDQARNEMRQACFDYLSLGGVFSNGPIALLSGLNPRPL 460
Query: 379 SLVLHFFAVAIYGVGRLLLPFPSPKRIWIGLRLITSASGIILPIIKAEGVRQMFFPATVP 200
SLV HFFAVAIYGVGRL+LP PSPKR+WIG+RLI+SA GII PIIKAEGVR MFFPATVP
Sbjct: 461 SLVAHFFAVAIYGVGRLMLPLPSPKRMWIGVRLISSACGIIFPIIKAEGVRHMFFPATVP 520
Query: 199 AYYRTP 182
AYYR P
Sbjct: 521 AYYRAP 526
>gb|AAO00686.1| Putative Squalene monooxygenase [Oryza sativa (japonica
cultivar-group)]
Length = 522
Score = 224 bits (572), Expect = 4e-58
Identities = 107/127 (84%), Positives = 116/127 (91%)
Frame = -2
Query: 559 RKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPL 380
RKPVASTINTLAGALYKVFCAS D A+ EMR+ACFDYLSLGG+FS GP++LLSGLNPRPL
Sbjct: 393 RKPVASTINTLAGALYKVFCASTDQAKNEMREACFDYLSLGGVFSNGPIALLSGLNPRPL 452
Query: 379 SLVLHFFAVAIYGVGRLLLPFPSPKRIWIGLRLITSASGIILPIIKAEGVRQMFFPATVP 200
SLV HFFAVAIYGVGRL+LP PSPKR+WIG RL++ A GII PIIKAEGVRQMFFPATVP
Sbjct: 453 SLVAHFFAVAIYGVGRLMLPVPSPKRMWIGARLVSGACGIIFPIIKAEGVRQMFFPATVP 512
Query: 199 AYYRTPP 179
AYYR PP
Sbjct: 513 AYYRAPP 519
>sp|O48651|ERG1_PANGI Squalene monooxygenase (Squalene epoxidase) (SE)
gi|2804278|dbj|BAA24448.1| squalene epoxidase [Panax
ginseng]
Length = 539
Score = 224 bits (572), Expect = 4e-58
Identities = 106/127 (83%), Positives = 117/127 (91%)
Frame = -2
Query: 559 RKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPL 380
RKPVASTINTLAGALYKVFCASPD AR+EMR ACFDYLSLGG+ S+GP++LLSGLNPRP+
Sbjct: 411 RKPVASTINTLAGALYKVFCASPDKARQEMRNACFDYLSLGGICSQGPIALLSGLNPRPI 470
Query: 379 SLVLHFFAVAIYGVGRLLLPFPSPKRIWIGLRLITSASGIILPIIKAEGVRQMFFPATVP 200
SL LHFFAVAIYGVGRLL+PFPSPKR+W+G RLI ASGII PIIK+EG+RQMFFPA VP
Sbjct: 471 SLFLHFFAVAIYGVGRLLIPFPSPKRMWLGARLILGASGIIFPIIKSEGLRQMFFPAIVP 530
Query: 199 AYYRTPP 179
AYYR PP
Sbjct: 531 AYYRAPP 537
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,412,428
Number of Sequences: 1393205
Number of extensions: 11485004
Number of successful extensions: 27616
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 26687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27600
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
