Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003474A_C01 KMC003474A_c01
(655 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P50346|RLA0_SOYBN 60S ACIDIC RIBOSOMAL PROTEIN P0 gi|7440740|... 328 3e-89
sp|P50345|RLA0_LUPLU 60S ACIDIC RIBOSOMAL PROTEIN P0 gi|1143507|... 322 2e-87
gb|AAF34767.1|AF227622_1 60S acidic ribosomal protein PO [Euphor... 322 3e-87
dbj|BAC10912.1| putative 60S acidic ribosomal protein P0 [Zinnia... 321 5e-87
gb|AAM65265.1| 60S acidic ribosomal protein P0-C [Arabidopsis th... 320 1e-86
>sp|P50346|RLA0_SOYBN 60S ACIDIC RIBOSOMAL PROTEIN P0 gi|7440740|pir||T07106 acidic
ribosomal protein P0 - soybean gi|1196897|gb|AAB63814.1|
acidic ribosomal protein P0 [Glycine max]
Length = 320
Score = 328 bits (842), Expect = 3e-89
Identities = 166/179 (92%), Positives = 175/179 (97%)
Frame = +1
Query: 118 KPTKAEKKIAYDAKLCQLLDDYTQILVVNADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 297
K TKAEKKIAYDAKLC L+++Y QILVVN+DNVGSNQLQNIR+GLRGDSVVLMGKNTMMK
Sbjct: 4 KQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMK 63
Query: 298 RTVRIHAEKSGNNVYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPID 477
R+VR+HAEK+GNN YLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPID
Sbjct: 64 RSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPID 123
Query: 478 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLG 654
VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLG
Sbjct: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLG 182
>sp|P50345|RLA0_LUPLU 60S ACIDIC RIBOSOMAL PROTEIN P0 gi|1143507|emb|CAA63786.1| P0
ribosomal protein [Lupinus luteus]
Length = 322
Score = 322 bits (826), Expect = 2e-87
Identities = 165/179 (92%), Positives = 171/179 (95%)
Frame = +1
Query: 118 KPTKAEKKIAYDAKLCQLLDDYTQILVVNADNVGSNQLQNIRRGLRGDSVVLMGKNTMMK 297
K TKAEKKI YD KLCQLLD+YTQILVVNADNVGS QLQNIR+GLRGDSVVLMGKNTMMK
Sbjct: 4 KATKAEKKIVYDGKLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMK 63
Query: 298 RTVRIHAEKSGNNVYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPID 477
R+VRIHAEK+GN +LNLIPLL+GNVGLIFTKG LKEVSEEVAKYKVGAPA VGLVAPID
Sbjct: 64 RSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVAPID 123
Query: 478 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLG 654
VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLG
Sbjct: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLG 182
>gb|AAF34767.1|AF227622_1 60S acidic ribosomal protein PO [Euphorbia esula]
Length = 317
Score = 322 bits (825), Expect = 3e-87
Identities = 163/177 (92%), Positives = 172/177 (97%)
Frame = +1
Query: 124 TKAEKKIAYDAKLCQLLDDYTQILVVNADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRT 303
+KAEKKIAYDAKLCQLLDDY+QILVV ADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR+
Sbjct: 3 SKAEKKIAYDAKLCQLLDDYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRS 62
Query: 304 VRIHAEKSGNNVYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVV 483
VR+H+EK+GN +LNL+PLL GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVV
Sbjct: 63 VRVHSEKTGNTAFLNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVV 122
Query: 484 VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLG 654
VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLG
Sbjct: 123 VPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLG 179
>dbj|BAC10912.1| putative 60S acidic ribosomal protein P0 [Zinnia elegans]
Length = 203
Score = 321 bits (823), Expect = 5e-87
Identities = 161/181 (88%), Positives = 172/181 (94%)
Frame = +1
Query: 112 MVKPTKAEKKIAYDAKLCQLLDDYTQILVVNADNVGSNQLQNIRRGLRGDSVVLMGKNTM 291
M K +KA+KKIAYD KLCQLLDDY Q+LV ADNVGSNQLQNIR+GLRGDSV+LMGKNTM
Sbjct: 1 MGKVSKADKKIAYDQKLCQLLDDYNQVLVAAADNVGSNQLQNIRQGLRGDSVILMGKNTM 60
Query: 292 MKRTVRIHAEKSGNNVYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 471
MKR++R+H+EK+GN YLNLIPLLVGNVGLIFTKGDLKEV EEVAKYKVGAPARVGLVAP
Sbjct: 61 MKRSIRMHSEKTGNKAYLNLIPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAP 120
Query: 472 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKL 651
+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKL
Sbjct: 121 VDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKL 180
Query: 652 G 654
G
Sbjct: 181 G 181
>gb|AAM65265.1| 60S acidic ribosomal protein P0-C [Arabidopsis thaliana]
Length = 323
Score = 320 bits (819), Expect = 1e-86
Identities = 164/181 (90%), Positives = 171/181 (93%)
Frame = +1
Query: 112 MVKPTKAEKKIAYDAKLCQLLDDYTQILVVNADNVGSNQLQNIRRGLRGDSVVLMGKNTM 291
MVK TKAEKKIAYD KLCQL+D+YTQILVV ADNVGS QLQNIR+GLRGDSVVLMGKNTM
Sbjct: 1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60
Query: 292 MKRTVRIHAEKSGNNVYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 471
MKR+VRIH+E SGN LNL+PLL GNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP
Sbjct: 61 MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120
Query: 472 IDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKL 651
IDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIK+GDKVGSSEAALLAKL
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKL 180
Query: 652 G 654
G
Sbjct: 181 G 181
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.315 0.134 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 594,907,494
Number of Sequences: 1393205
Number of extensions: 13917564
Number of successful extensions: 49510
Number of sequences better than 10.0: 195
Number of HSP's better than 10.0 without gapping: 44330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49135
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
