Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003473A_C01 KMC003473A_c01
(441 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB91862.1| putative carboxymethylenebutenolidase [Oryza sat... 107 4e-23
ref|NP_180811.1| putative carboxymethylenebutenolidase; protein ... 102 1e-21
gb|AAM63287.1| putative carboxymethylenebutenolidase [Arabidopsi... 102 1e-21
ref|ZP_00033473.1| hypothetical protein [Burkholderia fungorum] 48 3e-05
ref|NP_522867.1| PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solan... 45 2e-04
>dbj|BAB91862.1| putative carboxymethylenebutenolidase [Oryza sativa (japonica
cultivar-group)]
Length = 281
Score = 107 bits (266), Expect = 4e-23
Identities = 55/95 (57%), Positives = 65/95 (67%), Gaps = 7/95 (7%)
Frame = +3
Query: 171 SDAAPFQKVQIPMVDIDTKFDAYVVGKHDAPGIIVLQDWLGVDYHVKNHALRISQLGGGF 350
S AAPF VQI D T FDAYVVGK +APGI+VLQ+W GVDY +KNHA+ ISQ+G G+
Sbjct: 41 SSAAPFHMVQIQRDD--TTFDAYVVGKENAPGIVVLQEWWGVDYEIKNHAVHISQIGEGY 98
Query: 351 KALIPDLYRG-------NAKQLFHGIDWVDCVMGI 434
+ALIPDLYRG A+ L G+DW V I
Sbjct: 99 RALIPDLYRGKVALDVAEAQHLMEGLDWPGAVKDI 133
>ref|NP_180811.1| putative carboxymethylenebutenolidase; protein id: At2g32520.1,
supported by cDNA: 2114. [Arabidopsis thaliana]
gi|7435073|pir||T02551 probable
carboxymethylenebutenolidase [imported] - Arabidopsis
thaliana gi|3298540|gb|AAC25934.1| putative
carboxymethylenebutenolidase [Arabidopsis thaliana]
Length = 239
Score = 102 bits (253), Expect = 1e-21
Identities = 53/96 (55%), Positives = 68/96 (70%), Gaps = 7/96 (7%)
Frame = +3
Query: 168 ISDAAPFQKVQIPMVDIDTKFDAYVVGKHDAPGIIVLQDWLGVDYHVKNHALRISQLGGG 347
++D+A F+K+QI D T FDAYVVGK DAPGI+V+Q+W GVD+ +KNHA++ISQL G
Sbjct: 1 MADSA-FRKIQIQRDD--TTFDAYVVGKDDAPGIVVIQEWWGVDFEIKNHAIKISQLEPG 57
Query: 348 FKALIPDLYRG-------NAKQLFHGIDWVDCVMGI 434
FKALIPDLYRG A+ L G+DW + I
Sbjct: 58 FKALIPDLYRGKVGLDTAEAQHLMDGLDWPGAIKDI 93
>gb|AAM63287.1| putative carboxymethylenebutenolidase [Arabidopsis thaliana]
Length = 239
Score = 102 bits (253), Expect = 1e-21
Identities = 53/96 (55%), Positives = 68/96 (70%), Gaps = 7/96 (7%)
Frame = +3
Query: 168 ISDAAPFQKVQIPMVDIDTKFDAYVVGKHDAPGIIVLQDWLGVDYHVKNHALRISQLGGG 347
++D+A F+K+QI D T FDAYVVGK DAPGI+V+Q+W GVD+ +KNHA++ISQL G
Sbjct: 1 MADSA-FRKIQIQRDD--TTFDAYVVGKDDAPGIVVIQEWWGVDFEIKNHAIKISQLEPG 57
Query: 348 FKALIPDLYRG-------NAKQLFHGIDWVDCVMGI 434
FKALIPDLYRG A+ L G+DW + I
Sbjct: 58 FKALIPDLYRGKVGLDTAEAQHLMDGLDWPGAIKDI 93
>ref|ZP_00033473.1| hypothetical protein [Burkholderia fungorum]
Length = 235
Score = 47.8 bits (112), Expect = 3e-05
Identities = 25/61 (40%), Positives = 38/61 (61%), Gaps = 7/61 (11%)
Frame = +3
Query: 258 APGIIVLQDWLGVDYHVKNHALRISQLGGGFKALIPDLYRG-------NAKQLFHGIDWV 416
APGI+V+Q+W GV+ ++ A R++Q G+ AL+PDL+RG A L G+D+
Sbjct: 32 APGIVVIQEWWGVNEQIRGVADRLAQ--AGYLALVPDLFRGKTTVEEAEAHHLLDGLDFG 89
Query: 417 D 419
D
Sbjct: 90 D 90
>ref|NP_522867.1| PUTATIVE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
gi|17549558|ref|NP_522898.1| PUTATIVE TRANSMEMBRANE
PROTEIN [Ralstonia solanacearum]
gi|17431781|emb|CAD18459.1| PUTATIVE TRANSMEMBRANE
PROTEIN [Ralstonia solanacearum]
gi|17431812|emb|CAD18490.1| PUTATIVE TRANSMEMBRANE
PROTEIN [Ralstonia solanacearum]
Length = 238
Score = 45.1 bits (105), Expect = 2e-04
Identities = 19/43 (44%), Positives = 32/43 (74%)
Frame = +3
Query: 258 APGIIVLQDWLGVDYHVKNHALRISQLGGGFKALIPDLYRGNA 386
APG++V+Q+W G++ ++ A R++ G+ AL+PDLYRG+A
Sbjct: 32 APGVVVIQEWWGLNDQIRGVADRLA--AAGYVALVPDLYRGSA 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,423,346
Number of Sequences: 1393205
Number of extensions: 8330384
Number of successful extensions: 20651
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 20172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20637
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 6689237688
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
