Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003471A_C01 KMC003471A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H86180 hypothetical protein [imported] - Arabidopsis thalia... 48 1e-04
dbj|BAC42631.1| unknown protein [Arabidopsis thaliana] 48 1e-04
ref|NP_563716.2| hypothetical protein; protein id: At1g04780.1, ... 48 1e-04
dbj|BAC23200.1| NADH dehydrogenase subunit 5 [Sirembo imberbis] 35 0.57
ref|NP_704004.1| hypothetical protein [Plasmodium falciparum 3D7... 33 3.7
>pir||H86180 hypothetical protein [imported] - Arabidopsis thaliana
gi|7211987|gb|AAF40458.1|AC004809_16 Contains similarity
to the KE03 protein gb|AF064604 from Homo sapiens and to
Ank repeat family PF|00023. [Arabidopsis thaliana]
Length = 627
Score = 47.8 bits (112), Expect = 1e-04
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -1
Query: 604 PSDYTWVTAEAKKKKMQEKNKSKKGKS 524
P Y W+TAE KKKK+QEKNK+KKGKS
Sbjct: 597 PRGYNWITAEEKKKKVQEKNKAKKGKS 623
>dbj|BAC42631.1| unknown protein [Arabidopsis thaliana]
Length = 664
Score = 47.8 bits (112), Expect = 1e-04
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -1
Query: 604 PSDYTWVTAEAKKKKMQEKNKSKKGKS 524
P Y W+TAE KKKK+QEKNK+KKGKS
Sbjct: 634 PRGYNWITAEEKKKKVQEKNKAKKGKS 660
>ref|NP_563716.2| hypothetical protein; protein id: At1g04780.1, supported by cDNA:
117724. [Arabidopsis thaliana]
gi|21537006|gb|AAM61347.1| unknown [Arabidopsis
thaliana]
Length = 376
Score = 47.8 bits (112), Expect = 1e-04
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -1
Query: 604 PSDYTWVTAEAKKKKMQEKNKSKKGKS 524
P Y W+TAE KKKK+QEKNK+KKGKS
Sbjct: 346 PRGYNWITAEEKKKKVQEKNKAKKGKS 372
>dbj|BAC23200.1| NADH dehydrogenase subunit 5 [Sirembo imberbis]
Length = 612
Score = 35.4 bits (80), Expect = 0.57
Identities = 26/97 (26%), Positives = 47/97 (47%)
Frame = +3
Query: 303 LKTQAVIASITMFNFFMPHAPKWSTTIPWRITST*KIASITNKQNFYLLALNFLNNQSIF 482
+KT I+ + +F FF +TT W T+T I SI+ K + Y +A + +++
Sbjct: 45 VKTSFFISLLPLFLFFSEGTETVTTTWAWMNTNTFDI-SISLKFDIYSIAFIPI---ALY 100
Query: 483 QIWSLLMNWHHWLWLFPFFDLFFSCIFFFFASAVTQV 593
WS+L +++ P+ + FF + F S + V
Sbjct: 101 VTWSILEFALYYMHSDPYMNRFFKYLLIFLTSMIVLV 137
>ref|NP_704004.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498742|emb|CAD50812.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 3535
Score = 32.7 bits (73), Expect = 3.7
Identities = 31/126 (24%), Positives = 57/126 (44%)
Frame = +2
Query: 5 KQVAVTSSKPNEQIHDRKYHQGKAEMQ*KCKTEMKHTMIKPKSSKQVFKFIYNMNQIKGK 184
KQ + K N+QI+++KY+ E K+ ++ K K K V K IY IK K
Sbjct: 601 KQELLLKRKANKQIYEQKYYN---ESNKSIKSNKRNKSNKCKEMKNVQKGIY----IKNK 653
Query: 185 NYNLTRVNLNSNHVDESYPL*LQWVCTCIQTQFTNLWSKLENPSSYCINHNV*FLHATCP 364
NL + +N+ D + ++T + N + +++ S + + NV ++
Sbjct: 654 KSNLKNTSSLNNNNDNNK----------VRTNYINKKNDIKSQSFHHKHTNVNHINYHTY 703
Query: 365 QMVNHN 382
+ +N N
Sbjct: 704 KNINTN 709
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,703,845
Number of Sequences: 1393205
Number of extensions: 10263778
Number of successful extensions: 30083
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 28418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29984
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
