Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003470A_C01 KMC003470A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566655.1| expressed protein; protein id: At3g20230.1, sup... 130 3e-51
gb|AAL79794.1|AC079874_17 hypothetical protein [Oryza sativa] 61 5e-20
dbj|BAC43701.1| unknown protein [Arabidopsis thaliana] gi|283729... 58 7e-19
ref|NP_188884.1| hypothetical protein; protein id: At3g22450.1 [... 54 3e-13
gb|AAM91885.1| hypothetical protein [Oryza sativa (japonica cult... 51 3e-12
>ref|NP_566655.1| expressed protein; protein id: At3g20230.1, supported by cDNA:
256294. [Arabidopsis thaliana]
gi|9293979|dbj|BAB01882.1| gene_id:MAL21.25~unknown
protein [Arabidopsis thaliana]
gi|21554527|gb|AAM63600.1| unknown [Arabidopsis
thaliana] gi|24030337|gb|AAN41334.1| unknown protein
[Arabidopsis thaliana]
Length = 187
Score = 130 bits (326), Expect(2) = 3e-51
Identities = 61/68 (89%), Positives = 67/68 (97%)
Frame = -1
Query: 539 SFVRAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGTSQVIS 360
SFV+AAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFS++FIHAKVMHR TS+VIS
Sbjct: 57 SFVQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVIS 116
Query: 359 VATTNSKD 336
VATTN++D
Sbjct: 117 VATTNARD 124
Score = 93.6 bits (231), Expect(2) = 3e-51
Identities = 42/63 (66%), Positives = 57/63 (89%)
Frame = -2
Query: 340 RILRNSLPSLTDHDACRVVGRLIAQRSKEADVYALAYEPRQDERIEGKLGIVLDTIKDNG 161
R +R ++PSL D++ACR++G+LIA+RS EADVYA++YEPR+ ERIEGKLGIV+DTIK++G
Sbjct: 123 RDIRTNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHG 182
Query: 160 ISF 152
I F
Sbjct: 183 IIF 185
>gb|AAL79794.1|AC079874_17 hypothetical protein [Oryza sativa]
Length = 187
Score = 60.8 bits (146), Expect(2) = 5e-20
Identities = 27/60 (45%), Positives = 42/60 (70%)
Frame = -2
Query: 334 LRNSLPSLTDHDACRVVGRLIAQRSKEADVYALAYEPRQDERIEGKLGIVLDTIKDNGIS 155
++ +L S +D AC VGR +A+R+KEADVY Y PR+ ++ EGK+ V+ ++ DNGI+
Sbjct: 122 IKAALKSRSDIPACLAVGRFLAERAKEADVYTCTYTPRERDKFEGKIRAVVQSLIDNGIN 181
Score = 58.2 bits (139), Expect(2) = 5e-20
Identities = 29/54 (53%), Positives = 39/54 (71%), Gaps = 1/54 (1%)
Frame = -1
Query: 494 AKRPNRK-SWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGTSQVISVATTNSKD 336
+K P++ S+KQRT YM PF L+VF SKRF+ A + HR T + ++VA TNSKD
Sbjct: 68 SKNPHKHISFKQRTIAYMEPFTLDVFISKRFVSASLTHRTTCRQVAVAGTNSKD 121
>dbj|BAC43701.1| unknown protein [Arabidopsis thaliana] gi|28372952|gb|AAO39958.1|
At1g08850 [Arabidopsis thaliana]
Length = 189
Score = 57.8 bits (138), Expect(2) = 7e-19
Identities = 29/54 (53%), Positives = 39/54 (71%), Gaps = 1/54 (1%)
Frame = -1
Query: 494 AKRPNRK-SWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGTSQVISVATTNSKD 336
+K P++ S+KQRT YM PF L+VF SKRF+ A + HR T + ++VA TNSKD
Sbjct: 70 SKNPDKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKD 123
Score = 57.4 bits (137), Expect(2) = 7e-19
Identities = 25/55 (45%), Positives = 38/55 (68%)
Frame = -2
Query: 322 LPSLTDHDACRVVGRLIAQRSKEADVYALAYEPRQDERIEGKLGIVLDTIKDNGI 158
L S D AC +GR++++R+KEADVY +Y PR ++ EGK+ V+ ++ DNGI
Sbjct: 128 LRSRCDIPACMSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 182
>ref|NP_188884.1| hypothetical protein; protein id: At3g22450.1 [Arabidopsis
thaliana]
Length = 311
Score = 53.9 bits (128), Expect(2) = 3e-13
Identities = 23/48 (47%), Positives = 35/48 (72%)
Frame = -2
Query: 298 ACRVVGRLIAQRSKEADVYALAYEPRQDERIEGKLGIVLDTIKDNGIS 155
AC VG ++AQRS E D++ + Y PR+ ++IEGKL +VL + DNG++
Sbjct: 244 ACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVN 291
Score = 42.0 bits (97), Expect(2) = 3e-13
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -1
Query: 500 EAAKRPNRK-SWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGTSQVISVATTNSKD 336
EA K+ R ++ Q T + PF L+++ SK + A V+HR TS+V++VA + SKD
Sbjct: 176 EAVKKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKD 231
>gb|AAM91885.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 345
Score = 51.2 bits (121), Expect(2) = 3e-12
Identities = 23/47 (48%), Positives = 33/47 (69%)
Frame = -2
Query: 298 ACRVVGRLIAQRSKEADVYALAYEPRQDERIEGKLGIVLDTIKDNGI 158
AC VG L+A+R+ E D++ Y PR+ +RIEGK+ +VL I DNG+
Sbjct: 253 ACAAVGALLAKRAIEDDIHNAIYTPRKGDRIEGKIEVVLRAIIDNGV 299
Score = 41.6 bits (96), Expect(2) = 3e-12
Identities = 21/53 (39%), Positives = 33/53 (61%)
Frame = -1
Query: 494 AKRPNRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGTSQVISVATTNSKD 336
AKR ++ Q TD Y PF L++ +K + A +HR +S+V++VA + SKD
Sbjct: 188 AKRDRVPTFNQMTDPYHHPFCLDIHVTKGSVRACFVHRVSSRVVTVAHSISKD 240
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,463,250
Number of Sequences: 1393205
Number of extensions: 9897200
Number of successful extensions: 23402
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23397
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
