Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003466A_C02 KMC003466A_c02
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178113.1| hypothetical protein; protein id: At1g79950.1 [... 34 1.2
ref|NP_702485.1| hypothetical protein [Plasmodium falciparum 3D7... 34 1.5
dbj|BAC65685.1| mKIAA0933 protein [Mus musculus] 32 5.8
emb|CAB94202.1| GDP dissociation inhibitor [Lycopersicon esculen... 32 7.6
>ref|NP_178113.1| hypothetical protein; protein id: At1g79950.1 [Arabidopsis
thaliana]
Length = 983
Score = 34.3 bits (77), Expect = 1.2
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Frame = -2
Query: 488 FGNYEAFEADLCALSILGNNLSKRRSLSIKVKQLMLL-----ICI-EEINMGKSTRGEAF 327
+GN+E + LC LS L+K L + ++++L +C+ EE+N S RG+A
Sbjct: 90 YGNWENSLSSLCHLS-----LAKESGLFLNPPKMVVLGSREQLCVNEEVN---SLRGKAL 141
Query: 326 FQACLYNCKR 297
AC Y CK+
Sbjct: 142 TNACQYLCKK 151
>ref|NP_702485.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497670|gb|AAN37209.1|AE014826_8 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 523
Score = 33.9 bits (76), Expect = 1.5
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = -2
Query: 167 FLFPFDIIFY*CNIIF*ARCFCAS--KLLYSLLYTYMYIITIITVDFLINDYN 15
++F +IF+ +IF ++CFC KL +YT++++ +I+ LI D+N
Sbjct: 397 YVFSLILIFF---LIF-SQCFCRRLFKLFMGFIYTFLFLFSILIAYILIEDFN 445
>dbj|BAC65685.1| mKIAA0933 protein [Mus musculus]
Length = 1556
Score = 32.0 bits (71), Expect = 5.8
Identities = 20/74 (27%), Positives = 37/74 (49%), Gaps = 2/74 (2%)
Frame = -2
Query: 458 LCALSILGNNLSKRRSLSIKVKQLMLLICIEEINMGKSTRGE--AFFQACLYNCKRSHSS 285
+C ILGN R + +K ++++ I + ++M KS G+ F + L CK
Sbjct: 592 VCHRDILGN-----RDVQVKSVEVLIRITAQLVSMAKSAEGKNTEFIHSLLQRCKVQEFV 646
Query: 284 VVALAALRSTERSR 243
+++L+A T + R
Sbjct: 647 LLSLSASMYTSQKR 660
>emb|CAB94202.1| GDP dissociation inhibitor [Lycopersicon esculentum]
Length = 438
Score = 31.6 bits (70), Expect = 7.6
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1
Query: 238 QVLDLSVDLSAASATTEE 291
+V+DLSVDLSAASAT EE
Sbjct: 421 KVIDLSVDLSAASATAEE 438
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,017,235
Number of Sequences: 1393205
Number of extensions: 8863467
Number of successful extensions: 20129
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20104
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
