>KMC003465A_C02 KMC003465A_c02
ggttGAAATGTAATAGCATATTAGTATATAAGGGAGATATTTGAAACTAAAAGAAAATAT
TTATACAAACACAGGAAAATTATCCTGTTACCCGTGCATCAATATGTTTAATAATTTGCT
CAGACTAATTATGTGATAAAAGTTATATAATCATTGATGTCAGTGGCAGACAATCCTTTA
GCAACTTCAACAAATTCAAGATCATAACTGCCAACTATGGAGCTCCCTTTCTGATAACCC
TTGCTCTGATCTTTCATGCTTCTCTTCCAGGGTATAAAGTTTCGAATTTGCTGAAGCAGG
ACCAGACATTGGAGAAATCAGTGAAAATACACGATATGGTAACAAAGTTGAAGATGTTAC
CACTTCAAGAATAGAAGAGAGGGCCTGTAAATTAAAATGAAAGAACATCAAGTAACTGGT
TTCCCAGCCCCAATGAATTGGAAATGAAAACAAATAAAAAAATCCAGGCAAGGGAAAGAA
AAAAGAGAGGGTTAGGGGTGGAGGGTGTATATCAAAATTAGACTTCAATGTGGTAAGGCT
TCAATCCCTTAACAACC

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC003465A_C02 KMC003465A_c02
         (557 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_187852.1| hypothetical protein; protein id: At3g12460.1 [...    33  3.1
ref|NP_704321.1| histone acetyltransferase Gcn5, putative [Plasm...    32  4.0
gb|EAA21197.1| 36I5.4 [Plasmodium yoelii yoelii]                       31  9.0
pir||S27728 probable transport protein - Salmonella typhimurium ...    31  9.0
ref|NP_457817.1| probable amino acid permease [Salmonella enteri...    31  9.0

>ref|NP_187852.1| hypothetical protein; protein id: At3g12460.1 [Arabidopsis
           thaliana] gi|12321946|gb|AAG51003.1|AC069474_2
           hypothetical protein; 72371-73099 [Arabidopsis thaliana]
           gi|15795165|dbj|BAB03153.1|
           gb|AAD26968.1~gene_id:MQC3.28~similar to unknown protein
           [Arabidopsis thaliana]
          Length = 242

 Score = 32.7 bits (73), Expect = 3.1
 Identities = 22/68 (32%), Positives = 35/68 (51%)
 Frame = +3

Query: 129 LCDKSYIIIDVSGRQSFSNFNKFKIITANYGAPFLITLALIFHASLPGYKVSNLLKQDQT 308
           L D    + D SGR+S  N++  KI+  N G P    + L    S+  ++V N L  DQ 
Sbjct: 162 LMDLREFVSDSSGRRSMYNYSLEKIVEENLGYP---GVRLDREVSMSDWRVYN-LSYDQI 217

Query: 309 LEKSVKIH 332
           L+ S+ ++
Sbjct: 218 LQASIDVY 225

>ref|NP_704321.1| histone acetyltransferase Gcn5, putative [Plasmodium falciparum
           3D7] gi|23499060|emb|CAD51140.1| histone
           acetyltransferase Gcn5, putative [Plasmodium falciparum
           3D7]
          Length = 1484

 Score = 32.3 bits (72), Expect = 4.0
 Identities = 16/46 (34%), Positives = 25/46 (53%)
 Frame = -3

Query: 378 SSILEVVTSSTLLPYRVFSLISPMSGPASANSKLYTLEEKHERSEQ 241
           + +  V+TSS L  + +FS  S  + P S  +K    EEK E+ E+
Sbjct: 856 NEVKNVITSSLLSSFNIFSAFSNSNTPNSKKNKYDEEEEKEEKEEE 901

>gb|EAA21197.1| 36I5.4 [Plasmodium yoelii yoelii]
          Length = 805

 Score = 31.2 bits (69), Expect = 9.0
 Identities = 24/74 (32%), Positives = 37/74 (49%), Gaps = 6/74 (8%)
 Frame = -3

Query: 414 YLMFFHFN---LQALSSILEVVTSSTLLPYRVF--SLISPMSGP-ASANSKLYTLEEKHE 253
           Y+  FH N     AL SIL +VT +  L       +L+ P     A    ++  LEEK +
Sbjct: 577 YIGDFHINKINASALRSILGIVTQNPFLFNTTIQSNLLYPYKAHGAMLREQIQLLEEKMK 636

Query: 252 RSEQGLSERELHSW 211
           R+ Q   E+E++S+
Sbjct: 637 RASQNNDEKEIYSY 650

>pir||S27728 probable transport protein - Salmonella typhimurium
           gi|153898|gb|AAA92026.1| transport protein
          Length = 461

 Score = 31.2 bits (69), Expect = 9.0
 Identities = 28/108 (25%), Positives = 49/108 (44%), Gaps = 1/108 (0%)
 Frame = -2

Query: 487 LFFLSLAWIFLFVFISNSLGLGNQLLDVLSF*FTGPLFYS*SGNIFNFVTISCIFTDF-S 311
           +F++   ++ + +F  N +G  N    VL+F   G    + +  I NFV ++   +   S
Sbjct: 246 IFYVGAIFVIVTIFPWNEIG-SNGSPFVLTFAKIG---ITAAAGIINFVVLTAALSGCNS 301

Query: 310 NVWSCFSKFETLYPGREA*KIRARVIRKGAP*LAVMILNLLKLLKDCL 167
            ++SC      L   R+     A+V R G P   V +  L+ L+  CL
Sbjct: 302 GMYSCGRMLYALAKNRQLPAAVAKVSRHGVPVAGVALSILILLVGSCL 349

>ref|NP_457817.1| probable amino acid permease [Salmonella enterica subsp. enterica
           serovar Typhi] gi|16767205|ref|NP_462820.1| putative APC
           family, amino-acid transport protein, permease protein
           [Salmonella typhimurium LT2]
           gi|29143689|ref|NP_807031.1| probable amino acid
           permease [Salmonella enterica subsp. enterica serovar
           Typhi Ty2] gi|20141901|sp|P37456|YIFK_SALTY Probable
           transport protein yifK gi|25296492|pir||AH0920 probable
           amino acid permease STY3625 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
           gi|6960267|gb|AAF33457.1| S. typhimurium probable
           transport protein (YIFK) (SP:P37456); contains
           similarity to Pfam family PF00324 (Amino acid permease),
           score=523.6, E=1.4e-153, N=1 [Salmonella typhimurium
           LT2] gi|16422498|gb|AAL22779.1| putative APC family
           amino-acid transport protein [Salmonella typhimurium
           LT2] gi|16504504|emb|CAD09386.1| probable amino acid
           permease [Salmonella enterica subsp. enterica serovar
           Typhi] gi|29139324|gb|AAO70891.1| probable amino acid
           permease [Salmonella enterica subsp. enterica serovar
           Typhi Ty2]
          Length = 461

 Score = 31.2 bits (69), Expect = 9.0
 Identities = 28/108 (25%), Positives = 49/108 (44%), Gaps = 1/108 (0%)
 Frame = -2

Query: 487 LFFLSLAWIFLFVFISNSLGLGNQLLDVLSF*FTGPLFYS*SGNIFNFVTISCIFTDF-S 311
           +F++   ++ + +F  N +G  N    VL+F   G    + +  I NFV ++   +   S
Sbjct: 246 IFYVGAIFVIVTIFPWNEIG-SNGSPFVLTFAKIG---ITAAAGIINFVVLTAALSGCNS 301

Query: 310 NVWSCFSKFETLYPGREA*KIRARVIRKGAP*LAVMILNLLKLLKDCL 167
            ++SC      L   R+     A+V R G P   V +  L+ L+  CL
Sbjct: 302 GMYSCGRMLYALAKNRQLPAAVAKVSRHGVPVAGVALSILILLVGSCL 349

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,331,231
Number of Sequences: 1393205
Number of extensions: 9640837
Number of successful extensions: 22921
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22908
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 SPDL048d05_f BP055006 1 527 2 MR050a06_f BP079834 5 381 3 GNf042h10 BP070495 23 108 4 MPDL078d07_f AV780524 32 557

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