Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003461A_C02 KMC003461A_c02
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196742.1| putative protein; protein id: At5g11810.1 [Arab... 122 3e-27
ref|NP_612707.1| glycoprotein UL74 [Chimpanzee cytomegalovirus] ... 32 7.9
>ref|NP_196742.1| putative protein; protein id: At5g11810.1 [Arabidopsis thaliana]
gi|11281143|pir||T48540 hypothetical protein T22P22.200
- Arabidopsis thaliana gi|7573395|emb|CAB87699.1|
putative protein [Arabidopsis thaliana]
gi|26452379|dbj|BAC43275.1| unknown protein [Arabidopsis
thaliana]
Length = 306
Score = 122 bits (306), Expect = 3e-27
Identities = 62/118 (52%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Frame = -1
Query: 590 SDISSRLHLSLVMSYGKVSEDDESKFSVSKRADEKSYLSL-LYPLQSYAMKGGFPRKDVR 414
S+I SRLHLS+V+SYG V++ D S F + ++ + + L P QSY M+G R DVR
Sbjct: 189 SEILSRLHLSVVLSYGSVTDKDVSVFPIKTPQEDINPAFIGLVPRQSYTMRGEKTRDDVR 248
Query: 413 LHSPLLIAQWQDAVTRKDNAERFYFQDFMEHGGNLTIPADRFLHEIAFKLWKAPKYGA 240
+ P+L+AQWQ VTRKD + F+ + GNL IPADRF+HE+AFKLWKAPKYGA
Sbjct: 249 HYCPMLVAQWQHGVTRKDLVDTLSFEALKKLCGNLVIPADRFIHEVAFKLWKAPKYGA 306
>ref|NP_612707.1| glycoprotein UL74 [Chimpanzee cytomegalovirus]
gi|19881093|gb|AAM00713.1|AF480884_65 glycoprotein UL74
[chimpanzee cytomegalovirus]
Length = 461
Score = 31.6 bits (70), Expect = 7.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -1
Query: 407 SPLLIAQWQDAVTRKDNAERFYFQDFMEHGGNLTIPAD--RFLHEIAFKLWKAPKYG 243
+P+L Q QD VT + R+Y + + + NLT +D R H++A + YG
Sbjct: 340 NPILATQLQDLVTWVYSTFRYYSEPYCQRSRNLTAISDTVRHTHQVAHNQTPSTIYG 396
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,596,372
Number of Sequences: 1393205
Number of extensions: 8839416
Number of successful extensions: 20383
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20376
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
