Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003460A_C01 KMC003460A_c01
(473 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566070.1| arabinogalactan-protein (AGP16); protein id: At... 65 5e-10
gb|AAM65765.1| unknown [Arabidopsis thaliana] 64 1e-09
ref|NP_200137.1| arabinogalactan-protein, putative (AGP22); prot... 63 2e-09
ref|NP_191723.1| arabinogalactan-protein (AGP20); protein id: At... 60 9e-09
gb|AAM12785.1| unknown [Capsicum annuum] 57 1e-07
>ref|NP_566070.1| arabinogalactan-protein (AGP16); protein id: At2g46330.1, supported
by cDNA: gi_10880508, supported by cDNA: gi_15294169,
supported by cDNA: gi_20453294 [Arabidopsis thaliana]
gi|25408982|pir||E84901 hypothetical protein At2g46330
[imported] - Arabidopsis thaliana
gi|4559376|gb|AAD23036.1| expressed protein [Arabidopsis
thaliana] gi|10880509|gb|AAG24284.1|AF195897_1
arabinogalactan protein [Arabidopsis thaliana]
gi|15294170|gb|AAK95262.1|AF410276_1 At2g46330/F11C10.2
[Arabidopsis thaliana] gi|20197373|gb|AAM15047.1|
expressed protein [Arabidopsis thaliana]
gi|20453295|gb|AAM19886.1| At2g46330/F11C10.2
[Arabidopsis thaliana] gi|21553759|gb|AAM62852.1|
unknown [Arabidopsis thaliana]
Length = 73
Score = 64.7 bits (156), Expect = 5e-10
Identities = 32/57 (56%), Positives = 40/57 (70%)
Frame = -2
Query: 325 FAILSLVLFAISDLGGAHAFSPVSAPAPAPTSDGAALDQGIAYLLLLVALAITYIFH 155
FA+ S V I L GA + APAPAPTSDG ++DQGIAYLL++VAL +TY+ H
Sbjct: 10 FALFSFVFAVILSLAGAQSL----APAPAPTSDGTSIDQGIAYLLMVVALVLTYLIH 62
>gb|AAM65765.1| unknown [Arabidopsis thaliana]
Length = 63
Score = 63.5 bits (153), Expect = 1e-09
Identities = 34/60 (56%), Positives = 44/60 (72%)
Frame = -2
Query: 334 FFSFAILSLVLFAISDLGGAHAFSPVSAPAPAPTSDGAALDQGIAYLLLLVALAITYIFH 155
FF + + ++FAI L AHA S +APAPAPTSDG +DQGIAY+L+LVAL +TY+ H
Sbjct: 7 FFGVSTIVSIIFAIL-LPMAHAQS--AAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63
>ref|NP_200137.1| arabinogalactan-protein, putative (AGP22); protein id: At5g53250.1
[Arabidopsis thaliana] gi|9759172|dbj|BAB09787.1|
emb|CAB71094.1~gene_id:K19E1.5~similar to unknown
protein [Arabidopsis thaliana]
Length = 63
Score = 62.8 bits (151), Expect = 2e-09
Identities = 34/75 (45%), Positives = 49/75 (65%)
Frame = -2
Query: 379 LCSINFPGKMLQSVRFFSFAILSLVLFAISDLGGAHAFSPVSAPAPAPTSDGAALDQGIA 200
+ S+ FP ++L F I+S++L I+ S S+PAPAPTSDG ++DQGIA
Sbjct: 1 MASLKFPLEILAV-----FVIISVILLPIAQ-------SHSSSPAPAPTSDGTSIDQGIA 48
Query: 199 YLLLLVALAITYIFH 155
Y+L++VALA+TY H
Sbjct: 49 YVLMMVALALTYFIH 63
>ref|NP_191723.1| arabinogalactan-protein (AGP20); protein id: At3g61640.1
[Arabidopsis thaliana] gi|11357466|pir||T47956
hypothetical protein F15G16.30 - Arabidopsis thaliana
gi|6850855|emb|CAB71094.1| putative protein [Arabidopsis
thaliana] gi|21536871|gb|AAM61203.1| unknown
[Arabidopsis thaliana]
Length = 74
Score = 60.5 bits (145), Expect = 9e-09
Identities = 29/56 (51%), Positives = 39/56 (68%)
Frame = -2
Query: 322 AILSLVLFAISDLGGAHAFSPVSAPAPAPTSDGAALDQGIAYLLLLVALAITYIFH 155
A+ + V IS GA + APAP+PTSDG ++DQGIAYLL++VAL +TY+ H
Sbjct: 11 ALFAFVFAVISPFAGAQSL----APAPSPTSDGTSIDQGIAYLLMVVALVLTYLIH 62
>gb|AAM12785.1| unknown [Capsicum annuum]
Length = 67
Score = 57.0 bits (136), Expect = 1e-07
Identities = 30/56 (53%), Positives = 38/56 (67%)
Frame = -2
Query: 322 AILSLVLFAISDLGGAHAFSPVSAPAPAPTSDGAALDQGIAYLLLLVALAITYIFH 155
AI S+ F + A F APAPAPTSDG ++DQGIAY+L+LVAL +TY+ H
Sbjct: 10 AIFSMAFFTVQ----AQDF----APAPAPTSDGISIDQGIAYVLMLVALVLTYLIH 57
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376,946,886
Number of Sequences: 1393205
Number of extensions: 7992316
Number of successful extensions: 35981
Number of sequences better than 10.0: 150
Number of HSP's better than 10.0 without gapping: 32517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35510
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
