Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003458A_C01 KMC003458A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568775.1| putative protein; protein id: At5g52560.1, supp... 89 4e-17
dbj|BAA98074.1| gb|AAD38661.1~gene_id:F6N7.4~similar to unknown ... 89 4e-17
ref|XP_193049.1| similar to aggrecan 1; aggrecan, structural pro... 33 1.6
ref|NP_031450.1| aggrecan 1; aggrecan, structural proteoglycan o... 33 1.6
emb|CAA74350.1| EciB protein [Staphylococcus epidermidis] 32 3.6
>ref|NP_568775.1| putative protein; protein id: At5g52560.1, supported by cDNA:
gi_13430647 [Arabidopsis thaliana]
gi|13430648|gb|AAK25946.1|AF360236_1 unknown protein
[Arabidopsis thaliana] gi|14532822|gb|AAK64093.1|
unknown protein [Arabidopsis thaliana]
Length = 614
Score = 88.6 bits (218), Expect = 4e-17
Identities = 36/55 (65%), Positives = 51/55 (92%)
Frame = -3
Query: 532 DNAELKVGGSVQNNGWSLETIDHKDTSEPEALRIRGFKFNKVEQVEKKYSEPGKF 368
D+AE+K+GG ++NNGW++E++D+KDTS PE +RIRGF+FNKVEQ+EKK ++PGKF
Sbjct: 556 DDAEVKLGGLIKNNGWTMESVDYKDTSVPEEIRIRGFRFNKVEQLEKKLTQPGKF 610
>dbj|BAA98074.1| gb|AAD38661.1~gene_id:F6N7.4~similar to unknown protein
[Arabidopsis thaliana]
Length = 610
Score = 88.6 bits (218), Expect = 4e-17
Identities = 36/55 (65%), Positives = 51/55 (92%)
Frame = -3
Query: 532 DNAELKVGGSVQNNGWSLETIDHKDTSEPEALRIRGFKFNKVEQVEKKYSEPGKF 368
D+AE+K+GG ++NNGW++E++D+KDTS PE +RIRGF+FNKVEQ+EKK ++PGKF
Sbjct: 552 DDAEVKLGGLIKNNGWTMESVDYKDTSVPEEIRIRGFRFNKVEQLEKKLTQPGKF 606
>ref|XP_193049.1| similar to aggrecan 1; aggrecan, structural proteoglycan of
cartilage; cartilage matrix deficiency [Mus musculus]
Length = 2132
Score = 33.5 bits (75), Expect = 1.6
Identities = 28/86 (32%), Positives = 39/86 (44%), Gaps = 18/86 (20%)
Frame = +1
Query: 94 TNTKYKWAQ-ILYTLQTSCKNNFPNQS--GDRAYEQNNTIT----PTLTSKKA------- 231
T T+ +WAQ Y +T + PN S G+ T++ PTL+S +
Sbjct: 1856 TITESEWAQPTRYPTETLQEIESPNPSYSGEETQTAETTMSLTDAPTLSSSEGSGETEST 1915
Query: 232 ----KQKEEGGTKF*GHCLEHVITRK 297
+Q EEG TKF GHC H R+
Sbjct: 1916 VADQEQCEEGWTKFQGHCYRHFHDRE 1941
>ref|NP_031450.1| aggrecan 1; aggrecan, structural proteoglycan of cartilage; cartilage
matrix deficiency [Mus musculus]
gi|2497650|sp|Q61282|PGCA_MOUSE Aggrecan core protein
precursor (Cartilage-specific proteoglycan core protein)
(CSPCP) gi|1083206|pir||A55182 aggrecan precursor - mouse
gi|191772|gb|AAC37670.1| aggrecan
Length = 2132
Score = 33.5 bits (75), Expect = 1.6
Identities = 28/86 (32%), Positives = 39/86 (44%), Gaps = 18/86 (20%)
Frame = +1
Query: 94 TNTKYKWAQ-ILYTLQTSCKNNFPNQS--GDRAYEQNNTIT----PTLTSKKA------- 231
T T+ +WAQ Y +T + PN S G+ T++ PTL+S +
Sbjct: 1856 TITESEWAQPTRYPTETLQEIESPNPSYSGEETQTAETTMSLTDAPTLSSSEGSGETEST 1915
Query: 232 ----KQKEEGGTKF*GHCLEHVITRK 297
+Q EEG TKF GHC H R+
Sbjct: 1916 VADQEQCEEGWTKFQGHCYRHFPDRE 1941
>emb|CAA74350.1| EciB protein [Staphylococcus epidermidis]
Length = 976
Score = 32.3 bits (72), Expect = 3.6
Identities = 15/42 (35%), Positives = 24/42 (56%)
Frame = +1
Query: 91 PTNTKYKWAQILYTLQTSCKNNFPNQSGDRAYEQNNTITPTL 216
PTN Y+ + +Y + S KNN+ N+S ++ + N T TL
Sbjct: 258 PTNKYYQMLKSVYQFRVSLKNNYNNKSLNQLMKINETFKKTL 299
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,969,595
Number of Sequences: 1393205
Number of extensions: 9240857
Number of successful extensions: 20583
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 20115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20581
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
