Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003457A_C01 KMC003457A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196112.1| unknown protein; protein id: At5g04920.1, suppo... 87 1e-16
ref|XP_214382.1| similar to RIKEN cDNA 2210415M20 [Mus musculus]... 41 0.008
ref|NP_057159.1| CGI-145 protein [Homo sapiens] gi|4929759|gb|AA... 41 0.008
ref|XP_134058.1| RIKEN cDNA 2210415M20 [Mus musculus] gi|1478986... 41 0.008
gb|AAH45509.1| Similar to chromosome 13 open reading frame 9 [Da... 41 0.008
>ref|NP_196112.1| unknown protein; protein id: At5g04920.1, supported by cDNA:
gi_18175693, supported by cDNA: gi_20465996 [Arabidopsis
thaliana] gi|10178031|dbj|BAB11514.1|
gene_id:MUG13.23~unknown protein [Arabidopsis thaliana]
gi|18175694|gb|AAL59912.1| unknown protein [Arabidopsis
thaliana] gi|20465997|gb|AAM20220.1| unknown protein
[Arabidopsis thaliana]
Length = 440
Score = 87.4 bits (215), Expect = 1e-16
Identities = 37/54 (68%), Positives = 45/54 (82%)
Frame = -1
Query: 533 MAKEHLLSAESKGILCRDISPDGFRFYINLFPEIDRDDMHVVKDQGIYASWVSA 372
MAKEHLLSAE+KG+LCRD+SPDG RFY NLFPEID ++H+VK+ G Y W+ A
Sbjct: 381 MAKEHLLSAETKGLLCRDMSPDGLRFYFNLFPEIDPTNLHIVKEFGTYGEWIKA 434
>ref|XP_214382.1| similar to RIKEN cDNA 2210415M20 [Mus musculus] [Rattus norvegicus]
Length = 163
Score = 41.2 bits (95), Expect = 0.008
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = -1
Query: 533 MAKEHLLSAESKGILCRDISPDGFRFYINLF 441
+AKE LL AE G LCRD S +G RFY NLF
Sbjct: 129 LAKERLLLAEKMGHLCRDDSVEGLRFYPNLF 159
>ref|NP_057159.1| CGI-145 protein [Homo sapiens] gi|4929759|gb|AAD34140.1|AF151903_1
CGI-145 protein [Homo sapiens]
Length = 386
Score = 41.2 bits (95), Expect = 0.008
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = -1
Query: 533 MAKEHLLSAESKGILCRDISPDGFRFYINLF 441
+AKE LL AE G LCRD S +G RFY NLF
Sbjct: 352 LAKERLLLAEKMGHLCRDDSVEGLRFYPNLF 382
>ref|XP_134058.1| RIKEN cDNA 2210415M20 [Mus musculus] gi|14789869|gb|AAH10811.1|
Unknown (protein for MGC:19122) [Mus musculus]
Length = 386
Score = 41.2 bits (95), Expect = 0.008
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = -1
Query: 533 MAKEHLLSAESKGILCRDISPDGFRFYINLF 441
+AKE LL AE G LCRD S +G RFY NLF
Sbjct: 352 LAKERLLLAEKMGHLCRDDSVEGLRFYPNLF 382
>gb|AAH45509.1| Similar to chromosome 13 open reading frame 9 [Danio rerio]
Length = 382
Score = 41.2 bits (95), Expect = 0.008
Identities = 20/31 (64%), Positives = 22/31 (70%)
Frame = -1
Query: 533 MAKEHLLSAESKGILCRDISPDGFRFYINLF 441
+AKE LL AE G LCRD S +G RFY NLF
Sbjct: 352 LAKERLLLAEKMGHLCRDDSVEGLRFYPNLF 382
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,471,113
Number of Sequences: 1393205
Number of extensions: 8432041
Number of successful extensions: 15321
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 14968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15313
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
